1 5' 3' |
CGGTGGAGGAAGGGATAAGTCACCGGTGTTTCCGGTTTCTCCGGTGGCCCCGGATAGTGCGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACGgtaagattcttcgaattttctttttcgttaaagttgatatcttttttttaagtaaagcattagattcgttttttcaaccttaagtctaaaactttgttat...
species | Arabidopsis thaliana |
transcript | AT1G32860.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACG GGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATAGTTEST: gi|86086383|gb|DR382142.1|DR382142
genomic: CGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACGgtaagattct ... cttattgcagGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCAT-GTT
EST: CGGATAGTGCGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACG GGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATGTTA
genomic: CGGATAGTGCGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACGgtaagattct ... cttattgcagGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGGAGGAAGGGATAAGTCACCGGTGTTTCCGGTTTCTCCGGTGGCCCCGGATAGTGCGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACGgtaagattcttcgaattttctttttcgttaaagttgatatcttttttttaagtaaagcattagattcgttttttcaaccttaagtctaaaactttgttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaag