1 5' 3' | 2 5' 3' | 3 5' 3' |
CGTCGTTGTCTCCGCCATGTCCGGTGTTCACTTCCGTAGCCATAACATTCTAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGgtataataaactataaattaaagtttaattatgattgatcggtttagaaaattgtgcggttaatctgaaaaaaatcttataagtaaagaaaccacacgaa...
species | Arabidopsis thaliana |
transcript | AT1G32100.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAG CGGTTTTTACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCGEST: gi|86042645|gb|DR338400.1|DR338400
genomic: TAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGgtataataaa ... ataatttcagCGGTTTTTACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCG
EST: TAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAG CGGTTTTTACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCGEST: gi|86042644|gb|DR338399.1|DR338399
genomic: TAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGgtataataaa ... ataatttcagCGGTTTTTACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCG
EST: TAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAG CGGTTTTTACCATCTGAATTTGGTATGGATCCACCACGTATGGGAACATGCEST: gi|86042642|gb|DR338397.1|DR338397
genomic: TAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGgtataataaa ... ataatttcagCGGTTTTTACCATCTGAATTTGGTATGGATCCACCACGTATGGGA-CATGC
EST: TAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAG CGGTTTTTACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCG
genomic: TAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGgtataataaa ... ataatttcagCGGTTTTTACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGTTGTCTCCGCCATGTCCGGTGTTCACTTCCGTAGCCATAACATTCTAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGgtataataaactataaattaaagtttaattatgattgatcggtttagaaaattgtgcggttaatctgaaaaaaatcttataagtaaagaaaccacacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa