1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGACGGAGAATACGTTTCGATCCGGTTTCGATCCAAATCGGAGAGTTTGAGGATCTAAATCGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAGgtatgattcattagatttgagtgtttagatcgtcattatatagggttttgattttgccttttagattgaaatgaacttgatttggtttggattttaatac...
species | Arabidopsis thaliana |
transcript | AT1G31910.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAG AGTCCGAATCCGATCTACCACCACTACTCGTACCGACCGGTCATTTACTGCEST: gi|116471996|gb|EG514588.1|EG514588
genomic: CGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAGgtatgattca ... cttgcgccagAGTCCGAATCCGATCTACCACCACTACTCGTACCG-CCGGTCATTTACTGC
EST: GGATCTAAATCGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAG AGTCCGAATCCGATCTACCACCACTACTCGTACCGCCGGTCATTTACTGCCEST: gi|116471112|gb|EG513704.1|EG513704
genomic: GGATCTAAATCGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAGgtatgattca ... cttgcgccagAGTCCGAATCCGATCTACCACCACTACTCGTACCGCCGGTCATTTACTGCC
EST: GGATCTAAATCGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAG AGTCCGAATCCGATCTACCACCACTACTCGTACCGCCGGTCATTTACTGCCEST: gi|125103594|gb|EL157946.1|EL157946
genomic: GGATCTAAATCGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAGgtatgattca ... cttgcgccagAGTCCGAATCCGATCTACCACCACTACTCGTACCGCCGGTCATTTACTGCC
EST: GGATCTAAATCGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAG AGTCCGAATCCGATCTACCACCACTACTCGTACCGCC
genomic: GGATCTAAATCGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAGgtatgattca ... cttgcgccagAGTCCGAATCCGATCTACCACCACTACTCGTACCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGGAGAATACGTTTCGATCCGGTTTCGATCCAAATCGGAGAGTTTGAGGATCTAAATCGGAAATTGCATTAATACTCATCTCCAATCTCTTCTGAAGgtatgattcattagatttgagtgtttagatcgtcattatatagggttttgattttgccttttagattgaaatgaacttgatttggtttggattttaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatgaa