1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGAAAAATCGATCGAAACGGTTAGCGAATCGAAGCAGAGAGAGCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCGgtgaaactctctctcgatacagaaataaggaattggttgttgaatttgctaatgccgttgaggtttttcgttttttag
species | Arabidopsis thaliana |
transcript | AT1G31160.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGAGAGAGCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCG GAACTTCTCTACGGTGGGEST: gi|47830352|gb|CK120036.1|CK120036
genomic: GCAGAGAGAGCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCGgtgaaactct ... cgttttttagGAACTTCTCTACGGTGGG
EST: GCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCG GAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCGAGEST: gi|125196099|gb|EL211053.1|EL211053
genomic: GCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCGgtgaaactct ... cgttttttagGAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCGAG
EST: GCAGAGAGAGCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCG GAACTTCTCTACGGEST: gi|19877577|gb|AU238408.1|AU238408
genomic: GCAGAGAGAGCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCGgtgaaactct ... cgttttttagGAACTTCTCTACGG
EST: CAGAGAGAGCNTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCG GAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCGAGEST: gi|124824516|gb|EH909382.1|EH909382
genomic: CAGAGAGAGC-TTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCGgtgaaactct ... cgttttttagGAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCGAG
EST: CCTCTATGCTGCTGCTTCG GAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCGAGEST: gi|164098398|gb|ES203181.1|ES203181
genomic: CCTCTATGCTGCTGCTTCGgtgaaactct ... cgttttttagGAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCGAG
EST: GAGAGAGCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCG GAACTTCTCTACGGTGGGAAGGGTTGCTCAATCTGTTCGTGTGACTTCG
genomic: GAGAGAGCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCGgtgaaactct ... cgttttttagGAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAAAATCGATCGAAACGGTTAGCGAATCGAAGCAGAGAGAGCTTCAATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCGgtgaaactctctctcgatacagaaataaggaattggttgttgaatttgctaatgccgttgaggtttttcgttttttag
- - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT