1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGCTAAGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCTACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAgtatgtgccttttctttttaccctttccctatggctctttttgttgtgttaggttgatttggaatattagggttgttgcctctatgatctttgttcaagt...
species | Arabidopsis thaliana |
transcript | AT1G30970.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAA GGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGGEST: gi|116446094|gb|EG488686.1|EG488686
genomic: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAgtatgtgcct ... ttcacaccagAGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGG
EST: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAA AGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGGEST: gi|116463441|gb|EG506033.1|EG506033
genomic: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAgtatgtgcct ... ttcacaccagAGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGG
EST: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAA AGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGGEST: gi|164153282|gb|ES205069.1|ES205069
genomic: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAgtatgtgcct ... ttcacaccagAGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGG
EST: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAA GGTTCCTAATGCTAAAEST: gi|116406350|gb|EG448942.1|EG448942
genomic: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAgtatgtgcct ... ttcacaccagAGTTCCTAATGCTAAA
EST: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAA AGTTCCTAATGCTAAAGACAGTCGAGATTCAACTGATATTGAAATATATGGEST: gi|164160035|gb|ES049791.1|ES049791
genomic: AGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAgtatgtgcct ... ttcacaccagAGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGG
EST: TCAGGTTCATAAAGAGAATGTTACAAA GGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGG
genomic: TCAGGTTCATAAAGAGAATGTTACAAAgtatgtgcct ... ttcacaccagAGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTAAGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCTACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAgtatgtgccttttctttttaccctttccctatggctctttttgttgtgttaggttgatttggaatattagggttgttgcctctatgatctttgttcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttttt