Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATCCTCTTCTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttcttcgatttctcccgtaagatcttttgttcttacgcctcctattaggtttgtttcgatctcaaagtagccatggtcataatagtatttgattg...

Basic information

species Arabidopsis thaliana
transcript AT1G30230.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164035792|gb|ES198651.1|ES198651
EST:     CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         TGGAAAAGGTTCGAGC
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGC
EST: gi|152037815|gb|BP798735.2|BP798735
EST:     CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         C
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcag-
EST: gi|152037815|gb|BP798735.2|BP798735
EST:     CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         C
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcag-
EST: gi|47831915|gb|CK121599.1|CK121599
EST:     CATCTTCAAAGACTGCGCCTTTTAGCTCAG                         TGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
genomic: CATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
EST: gi|164050942|gb|ES115761.1|ES115761
EST:     GCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         TGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCT
genomic: GCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCT
EST: gi|125280556|gb|EL294641.1|EL294641
EST:     CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         TGAAAAAGGTTCGAGCTTACGGAAACTATGGCAGCATTCCCTAAACCTTAA
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTT-CGGAAACTATGGCAGCATTCCCTAA-CCTTAA
EST: gi|164195191|gb|ES055765.1|ES055765
EST:     GCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         TGAAAAAGGTTCGAGCTTCGGAAACTATGG
genomic: GCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGG
EST: gi|116416034|gb|EG458626.1|EG458626
EST:     CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         TGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
EST: gi|86078823|gb|DR374580.1|DR374580
EST:     CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         TGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
EST: gi|125045287|gb|EL117556.1|EL117556
EST:     CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         TGAAAAAGGTTCGAG
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAG
EST: gi|164212232|gb|ES164156.1|ES164156
EST:     CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG                         TGAAAAAGGTTCGAGCTTCGGAAAC
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCATCCTCTTCTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttcttcgatttctcccgtaagatcttttgttcttacgcctcctattaggtttgtttcgatctcaaagtagccatggtcataatagtatttgattg

- - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA