1 5' 3' | 2 5' 3' | 3 5' 3' |
AACCAGCTTCCTGTGACTGCGTTTCCACCGTACGGAGAAACCTTCTTCCACCACCCAACCGGTCGTTCCTGCGATGGCCGCATCATCATGGACTTTATCGgtacttctctttctatatgactcgagatgtgagtgaatatcaaattatggtccttgagaagaatccaaaagataataatcaaactgataattgtgtttga...
species | Arabidopsis thaliana |
transcript | AT1G28600.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGACTTTATCG CTTGAATTTGTGGGGCTTCCTTATGTGCCTCCGTACTTTGGATCTAAAAATEST: gi|124869489|gb|EH953926.1|EH953926
genomic: TGGACTTTATCGgtacttctct ... cctttaatagC-TGAATTTGTGGGGCTTCCTTATGTGCCTCCGTACTTTGGATCTAAAAAT
EST: CCAACCGGTCGTTCCTGCGATGGCCGCATCATCATGGACTTTATCG CTGAATTTGTGGGGCTTCCTTATGTGCCTCCGTACTTTGGATCTAAAAATA
genomic: CCAACCGGTCGTTCCTGCGATGGCCGCATCATCATGGACTTTATCGgtacttctct ... cctttaatagCTGAATTTGTGGGGCTTCCTTATGTGCCTCCGTACTTTGGATCTAAAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCAGCTTCCTGTGACTGCGTTTCCACCGTACGGAGAAACCTTCTTCCACCACCCAACCGGTCGTTCCTGCGATGGCCGCATCATCATGGACTTTATCGgtacttctctttctatatgactcgagatgtgagtgaatatcaaattatggtccttgagaagaatccaaaagataataatcaaactgataattgtgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaac