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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCCCGGTGGTATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACTCGATTACGCTCCGATATACTCTCTTTTAATCAGgttttttagttaaaatctaaataatccactgagattcgtgtttttcgtttttagaaaccctaatttttgagtgtgttttttttgtttttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G28380.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072585|gb|DR368342.1|DR368342
EST:     ATAAAGGCGAACGTACTCGATTACGCTCCGATATACTCTCTTTTAATCAG                         ATGTCGGAGAAGTTTAATCAAGATATGCGTCTCTCCGGGAA
genomic: ATAAAGGCGAACGTACTCGATTACGCTCCGATATACTCTCTTTTAATCAGgttttttagt ... ttttgtgtagATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAA
EST: gi|124912652|gb|EH986650.1|EH986650
EST:     CTCCGATATACTCTCTTTTAATCAG                         ATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCA
genomic: CTCCGATATACTCTCTTTTAATCAGgttttttagt ... ttttgtgtagATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCA
EST: gi|116397734|gb|EG440326.1|EG440326
EST:     ATAAAGGCGAACGTACTCGATTACGCTCCGATATACTCTCTTTTAATCAG                         ATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCA
genomic: ATAAAGGCGAACGTACTCGATTACGCTCCGATATACTCTCTTTTAATCAGgttttttagt ... ttttgtgtagATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCA