1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATTGGATCTGCAAATTCGCTGGTCGTAAGAAGGTTGGCATGTTGCTTCTCTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGgtaaatcgattctcgacgattttgggtactcatggtagtttagcttgtggatttagtttctaagttgggataactattggttcagctgaataattttagt...
species | Arabidopsis thaliana |
transcript | AT1G28240.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAG GTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCAEST: gi|116442597|gb|EG485189.1|EG485189
genomic: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGgtaaatcgat ... ttgtaactagGTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCA
EST: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAG GTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCAEST: gi|116428294|gb|EG470886.1|EG470886
genomic: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGgtaaatcgat ... ttgtaactagGTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCA
EST: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAG GTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCAEST: gi|116428041|gb|EG470633.1|EG470633
genomic: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGgtaaatcgat ... ttgtaactagGTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCA
EST: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAG GTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCAEST: gi|116427868|gb|EG470460.1|EG470460
genomic: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGgtaaatcgat ... ttgtaactagGTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCA
EST: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAG GTGAAGATAGTCAGGAAGATCAAGGTCCTCCGAGTCTTCATTTCAATGGCA
genomic: CTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGgtaaatcgat ... ttgtaactagGTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGGATCTGCAAATTCGCTGGTCGTAAGAAGGTTGGCATGTTGCTTCTCTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGgtaaatcgattctcgacgattttgggtactcatggtagtttagcttgtggatttagtttctaagttgggataactattggttcagctgaataattttagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctcgac