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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTCCAGATAATAAAAAGAAAATCTTTTTTTGCTTAAAGAGCTCAAACCGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGGgtattgtttccatttctcttttttgggttcaatttttggttctggattagcctttgtaatgtagtagttctgcgaatatacttagtgtaattaatcagct...

Basic information

species Arabidopsis thaliana
transcript AT1G28100.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043029|gb|DR338784.1|DR338784
EST:     CTCCGGAGTGTTTCAACGAAGCTTGG                         GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
genomic: CTCCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
EST: gi|86043031|gb|DR338786.1|DR338786
EST:     CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGG                         GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
genomic: CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
EST: gi|86043027|gb|DR338782.1|DR338782
EST:     CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGG                         GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
genomic: CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
EST: gi|116475770|gb|EG518362.1|EG518362
EST:     CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGG                         GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
genomic: CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
EST: gi|125239221|gb|EL253306.1|EL253306
EST:     CCGGAGTGTTTCAACGAAGCTTGG                         GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
genomic: CCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA