1 5' 3' | 2 5' 3' | 3 5' 3' |
GTAGATATGAAAATCCACTCTTGCCTCTCCGCCATTCTTCTGTTCCTCTTCTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGGACAGAGCGAATTTCAGgtacttgttcttcttgctccagcagattggaatgtagagttgaattgattaatccttgagggtcgctcaaataagtttgaaatctgtcgtttctccagca...
species | Arabidopsis thaliana |
transcript | AT1G27440.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGGACAGAGCGAATTTCAG GAAGTGCTGGTGATGTTTTGGAGGATGATCCAGTGGGAAAGCTTAAGGTTTEST: gi|86072587|gb|DR368344.1|DR368344
genomic: CTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGGACAGAGCGAATTTCAGgtacttgttc ... tgaaatgcagGAAGTGCTGGTGATGTTTTGGAGGATGATCCAGTGGGAAAGCTTAAGGTTT
EST: CTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGGACAGAGCGAATTTCAG GAAGTGCTGGTGATGTTTTGGAGGATGATCCAGTGGGAAAGCTTAAGGTTTEST: gi|86072586|gb|DR368343.1|DR368343
genomic: CTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGGACAGAGCGAATTTCAGgtacttgttc ... tgaaatgcagGAAGTGCTGGTGATGTTTTGGAGGATGATCCAGTGGGAAAGCTTAAGGTTT
EST: CTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGGACAGAGCGAATTTCAG GAAGTGCTGGTGATGTTTTGGAGGATGATCCAGTGGGAAAGCTTAAGGTTT
genomic: CTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGGACAGAGCGAATTTCAGgtacttgttc ... tgaaatgcagGAAGTGCTGGTGATGTTTTGGAGGATGATCCAGTGGGAAAGCTTAAGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGATATGAAAATCCACTCTTGCCTCTCCGCCATTCTTCTGTTCCTCTTCTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGGACAGAGCGAATTTCAGgtacttgttcttcttgctccagcagattggaatgtagagttgaattgattaatccttgagggtcgctcaaataagtttgaaatctgtcgtttctccagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctccagc