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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGATTAGGGTTTCTTCTGTTTCACTATATATTAAGTGTCTCCAACTACTGAGATCTCTATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgttacactagactcgtcgttacaacgttttcacttctaacttatgctcctatacttatgttcttcgtcttcttattgtttttcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G27400.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164131144|gb|EL995927.1|EL995927
EST:     ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATC
genomic: ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATC
EST: gi|47827860|gb|CK117544.1|CK117544
EST:     TGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT
genomic: TGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT
EST: gi|125036072|gb|EL108341.1|EL108341
EST:     ATCCTCTCCGTCCTCTGTTCTCCTCATTGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAATCT
genomic: ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATCACCAAATCT
EST: gi|124843520|gb|EH927957.1|EH927957
EST:     ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATAT
genomic: ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATAT
EST: gi|164171465|gb|ES173629.1|ES173629
EST:     ATCCTCTCCGTCCTCTGTTCTTCTCATTAGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATC
genomic: ATCCTCTCCGTCCTCTGTTCTTCTCATT-GGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATC
EST: gi|116444090|gb|EG486682.1|EG486682
EST:     ACTGAGATCTCTATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT
genomic: ACTGAGATCTCTATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGATTAGGGTTTCTTCTGTTTCACTATATATTAAGTGTCTCCAACTACTGAGATCTCTATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgttacactagactcgtcgttacaacgttttcacttctaacttatgctcctatacttatgttcttcgtcttcttattgtttttcttcag

- - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC