1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAAGGTTTTTTTTAGTCTTTGGTTAAACGATGGGAAGGACAAAGAAACCTCAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACAgtaagtaacaattctacttccttgaaatttgatatctttaaggtttgtttacttgatacttatcttcag
species | Arabidopsis thaliana |
transcript | AT1G26530.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACA TTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCCEST: gi|116440489|gb|EG483081.1|EG483081
genomic: CAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACAgtaagtaaca ... ttatcttcagTTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCC
EST: CAAAAGTTTGCAGTAGTGAAGATGATGATAAGCCACAAAGCTTTGAAACA TTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCCEST: gi|116440488|gb|EG483080.1|EG483080
genomic: CAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACAgtaagtaaca ... ttatcttcagTTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCC
EST: CAAAAGTTTGCAGTAGTGAAGATGATGATAAGCCACAAAGCTTTGAAACA TTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCCEST: gi|116440490|gb|EG483082.1|EG483082
genomic: CAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACAgtaagtaaca ... ttatcttcagTTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCC
EST: CAAGAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACA TTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCCEST: gi|116440491|gb|EG483083.1|EG483083
genomic: CAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACAgtaagtaaca ... ttatcttcagTTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCC
EST: CAAGAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACA TTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCC
genomic: CAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACAgtaagtaaca ... ttatcttcagTTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAACTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGGTTTTTTTTAGTCTTTGGTTAAACGATGGGAAGGACAAAGAAACCTCAAAAGTTTGCAGTAATGAAGATGATGATAAGCCACAAAGCTTTGAAACAgtaagtaacaattctacttccttgaaatttgatatctttaaggtttgtttacttgatacttatcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG