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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGTTTCCGACGGGGTTAGCTCTATGGAATCCATGAATCACGTTGCATCTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttgaaccatatagactactaccgattccgaaatcaaaacaatggattgagttaacaacacttgagagtggctctcaatttttgaattggagatctgcatagttatattcattggtcaacattgtcaagtagtgaacttttccttcttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G26160.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043959|gb|DR339714.1|DR339714
EST:     CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAG                         ACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
genomic: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
EST: gi|124884116|gb|EH963018.1|EH963018
EST:     TTCCTAACGTTGTGTCATCGTCTCAAG                         ACAACAAAGAGAAAAGGGTGGATTAATCAGGG
genomic: TTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGG
EST: gi|86043955|gb|DR339710.1|DR339710
EST:     CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAG                         ACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
genomic: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
EST: gi|86043954|gb|DR339709.1|DR339709
EST:     CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAG                         ACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
genomic: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
EST: gi|86043958|gb|DR339713.1|DR339713
EST:     CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAG                         ACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
genomic: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA