Sequence
atgc intronic sequence ATGC exonic sequenceCCGAGTTTCGACGCTGCGGCTGATAATGAGTTTATTACTTTGCTTCATGGCTCGGATCCAGTGAAAGTGGAGCTTAATCGACTAGAGAATGAAGTTAGAGgtctgataatgctgttcgatttttttattttttgtcgattcggtttctgattattggttgttggggggatgtag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G24764.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 1
CCGAGTTTCGACGCTGCGGCTGATAATGAGTTTATTACTTTGCTTCATGGCTCGGATCCAGTGAAAGTGGAGCTTAATCGACTAGAGAATGAAGTTAGAGgtctgataatgctgttcgat--------ttttttattttttgtcgattcggtttctgattattggttgttggg----gggatgtag---------------------------------------
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GTGAGACCGCCGAGCATGGACGCCGACGAGTTCATGAATTTGTTGCACGGTTCGGATCCGGTGAAAGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAGgtaagaaaatgcagctcgatccgaagtgttcttcaccgtgattttttgtgtttttttaattttgaattttgagttttgaaatttgatttttttttttttgtatttttgtttgtgtgtgtttgcag
upper sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA05G34560.1 (Glycine max), 5'ss of exon 1
CCGA-GTTTCGACGCTGCGGCTGATAATGAGTTTATTACTTTGCTTCATGGCTCGGATCCAGTGAAAGTGGAGCTTAATCGACTAGAGAATGAAGTTAGAGgtctgataatgctgttcgatttttttattttttgtc--gattcggtttct--------gattattggt-----tgttggggggatgtag
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TCGATGAGGCCGAGCCTCGAC-GCGGACGAGTTCATGAACCTGTTGCACGGTTCGGATCCGGTGAAGGTGGAGCTTAATCGCTTGGAGAATGAAGTGAGAGgtgcgaaaatgcgactcgatctgacgagttcttaacctgattttgctccttcactaatgactctcactcactgtgttgtgtgtttgtag
upper sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA02G09390.1 (Glycine max), 5'ss of exon 1
CCGAGTTTCGACGCTGCGGCTGATAATGAGTTTATTACTTTGCTTCATGGCTCGGATCCAGTGAAAGTGGAGCTTAATCGACTAGAGAATGAAGTTAGAGgtctgataatgctgttcgatttttt-tattttttgtcg--attcggtttctgattattggttgttggggggatgtag----------------------------------------
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GTGAGGCCGCCGAGCATGGACGCCGACGAGTTCATGAATTTGTTGCACGGTTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAGgtgcgaaaatgcagctcgatccgaagtgttcttcgccgtgattttttttttttttttgtgttttttgagttttgaattttgaatttttgttttttttgtgtgtgtttgtgtttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|152038546|gb|AV828824.2|AV828824EST: CTCGGATCCAGTGAAAGTGGAGCTTAATCGACTAGAGAATGAAGTTAGAG ATAAGGATCGGGAGTTAGGAGAAGCAAACGCTGAGATCAAAGCGCTTAGGT
genomic: CTCGGATCCAGTGAAAGTGGAGCTTAATCGACTAGAGAATGAAGTTAGAGgtctgataat ... ggggatgtagATAAGGATCGGGAGTTAGGAGAAGCAAACGCTGAGATCAAAGCGCTTAGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGAGTTTCGACGCTGCGGCTGATAATGAGTTTATTACTTTGCTTCATGGCTCGGATCCAGTGAAAGTGGAGCTTAATCGACTAGAGAATGAAGTTAGAGgtctgataatgctgttcgatttttttattttttgtcgattcggtttctgattattggttgttggggggatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT