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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTGATGGTGCTGCGAATCAGGGACAGTTGTTTGAGGCCTTGAACATTTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTgtgagtttattttttggttaattgtaatttgtttggtggaattgttgagacttttgtgttgatttggattgtttgatgtttag

Basic information

species Arabidopsis thaliana
transcript AT1G24180.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24180.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 1
TATGGTGATGGTGCTGCGAATCAGGGACAGTTGTTTGAGGCCTTGAACATTTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTgtgagt-ttattttttggttaattgtaa--tttgtttggtggaattgtt-----gagacttttgtgttgatttg-gattgtttgatgtttag----------
|| |||||||||||||| |||||||| |||||||| |||||  | |||||||| ||| | |||||| | ||  | ||| | || ||||||||||| || ||||||| | |  | | || |  || ||   |||||||||   || | ||      ||||  ||||  | ||  | |  | | |||  ||             
TACGGTGATGGTGCTGCCAATCAGGGCCAGTTGTTCGAGGCGCTTAACATTTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTgtgagtatgaaatgtggggtggttttagactttgtttggataaacttttcctttaagacaattgt--taatcagcggctttatgacattggttaaaaaatta

upper sequence: AT1G24180.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S56_222V6.1 (Physcomitrella patens), 5'ss of exon 1
TATGGTGATGGTGCTGCGAATCAGGGACAGTTGTTTGAGGCCTTGAACATTTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTgtgagtttattttttggttaattgtaatttgtttggtggaattgttgagactttt---gtgttgatttggattgtttg-------atgtttag------------------------------------------------------------------------------
||||||||||| ||||| ||||| |||||| |||| |||||| |||||||||| ||  | |||||| |||| |  ||   ||| |||||||| || |||||||||| || ||  |    ||   ||| | | |  || |||   |||    | |    ||    || | || |  | |       ||||| |                                                                               
TATGGTGATGGCGCTGCTAATCAAGGACAGCTGTTCGAGGCCATGAACATTTCTGCACTTTGGGATCTGCCAGTTATCTATGTCTGCGAGAACAATCATTgtgagtataattgctctaaaaccctaaatcgatgtgttgaacatttggagttatgcgggtagaaatgtagacttctggctcgaatatgttcaattgtcttctactaccaatgcatcgttctccttggcgtgaaattctgtcggaattaagaattggctctgttaatgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830068|gb|CK119752.1|CK119752
EST:     TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATT                         ATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
genomic: TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTgtgagtttat ... tgatgtttagATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
EST: gi|116467475|gb|EG510067.1|EG510067
EST:     TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAGTAACCATT                         ATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
genomic: TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTgtgagtttat ... tgatgtttagATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
EST: gi|116486096|gb|EG528688.1|EG528688
EST:     TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATT                         ATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
genomic: TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTgtgagtttat ... tgatgtttagATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
EST: gi|47828819|gb|CK118503.1|CK118503
EST:     TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATT                         ATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
genomic: TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTgtgagtttat ... tgatgtttagATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
EST: gi|116465222|gb|EG507814.1|EG507814
EST:     TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAGTAACCATT                         ATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
genomic: TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTgtgagtttat ... tgatgtttagATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCA
EST: gi|116486095|gb|EG528687.1|EG528687
EST:     TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATT                         ATGGAATGGGAACGGCTACATGGGAGGTCGGCTAAGTCTCCGGCTTATTTC
genomic: TTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTgtgagtttat ... tgatgtttagATGGAATGGGAACGGCTACATGG-AGGTCGGCTAAGTCTCCGGCTTATTTC