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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAAGAAGAAGAAGAAGAAGAAGAAAAAACTATGGAGAATGAGAGGGAAAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGATACGATGgtattttccgatttctggatctctattcagaaaatgatttgttcatgtttctgaaaaaatccgatcttttattgctccgatcgaaattgtttttacattt...

Basic information

species Arabidopsis thaliana
transcript AT1G22300.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828946|gb|CK118630.1|CK118630
EST:     AAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGATACGATG                         AAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTG
genomic: AAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGATACGATGgtattttccg ... gatgatgcagAAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTG
EST: gi|47830317|gb|CK120001.1|CK120001
EST:     AAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGATACGATG                         AAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTG
genomic: AAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGATACGATGgtattttccg ... gatgatgcagAAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTG
EST: gi|47831981|gb|CK121665.1|CK121665
EST:     AAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGATACGATG                         AAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTG
genomic: AAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGATACGATGgtattttccg ... gatgatgcagAAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTG
EST: gi|47828961|gb|CK118645.1|CK118645
EST:     AAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGATACGATG                         AAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTG
genomic: AAAGCAGGTTTACTTGGCTAAGCTCTCCGAGCAAACCGAAAGATACGATGgtattttccg ... gatgatgcagAAATGGTGGAGGCGATGAAGAAAGTTGCTCAGCTTGATGTGGAGCTAACTG