1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCTAAAATCAATGAAGATTTCTACAGGCGTACTCTTTCTGGTGGTGTTATCACCCTCGCCTCTTCTATTGTCATGCTAATTCTCTTCTTCTCCGAGCTTCgtaagttcatttgatctcccctgttttggttttggatccaatttgattctaggaagcttaaaggttgatactttgtagaattagagctccaaagttttgatttttctttgtgggttttgattttgattgtgtttttgttttgttttatttgtgggtttgtttggtttag
species | Arabidopsis thaliana |
transcript | AT1G22200.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACCCTCGCCTCTTCTATTGTCATGCTAATTCTCTTCTTCTCCGAGCTTC AGCTGTACATTCACCCGGTTACTGAGACTCAGCTTEST: gi|124930233|gb|EL007703.1|EL007703
genomic: CACCCTCGCCTCTTCTATTGTCATGCTAATTCTCTTCTTCTCCGAGCTTCgtaagttcat ... tttggtttagAGCTGTACATTCACCCGGTTACTGAGACTCAGCTT
EST: CTTCTATTGTCATGCTAATTCTCTTCTTCTCCGAGCTTC AGCTGTACATTCACCCGGTTACTGAGACTCAGCTTEST: gi|163991902|gb|ES092563.1|ES092563
genomic: CTTCTATTGTCATGCTAATTCTCTTCTTCTCCGAGCTTCgtaagttcat ... tttggtttagAGCTGTACATTCACCCGGTTACTGAGACTCAGCTT
EST: CACCCTCGCCTCTTCTATTGTCATGCTAATTCTCTTCTTCTCCGAGCTTC AGCTGTACATTCACCCGGTTACTGAGACTCAGCTTCGTGTTGATAC
genomic: CACCCTCGCCTCTTCTATTGTCATGCTAATTCTCTTCTTCTCCGAGCTTCgtaagttcat ... tttggtttagAGCTGTACATTCACCCGGTTACTGAGACTCAGCTTCGTGTTGATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTAAAATCAATGAAGATTTCTACAGGCGTACTCTTTCTGGTGGTGTTATCACCCTCGCCTCTTCTATTGTCATGCTAATTCTCTTCTTCTCCGAGCTTCgtaagttcatttgatctcccctgttttggttttggatccaatttgattctaggaagcttaaaggttgatactttgtagaattagagctccaaagttttgatttttctttgtgggttttgattttgattgtgtttttgttttgttttatttgtgggtttgtttggtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT