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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAGAGAAGACACTCAAGTGATTATTCTGAAGATTTTCTAAGATCTTGCTCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagtttaggacctaaagattaatctcatggttttggtttgattagatatgtaattaacgatttggttttggttgttaaattatgagcag

Basic information

species Arabidopsis thaliana
transcript AT1G22160.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86017362|gb|DR313108.1|DR313108
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAKCGTTTTGTAGTTTAGAGTGCAGGCA
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCA
EST: gi|86017381|gb|DR313127.1|DR313127
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC
EST: gi|152033874|gb|BP818745.2|BP818745
EST:     CTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACCATCTATATGTATAG                         AGGAGATAGAGCCGTTTTGTAGCTTAAGAGTGCAGGCAACAACAAATTACA
genomic: CTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGAC-ATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGC-GTTTTGTAGTTTA-GAGTGCAGGCAACAACAAATTACA
EST: gi|86017386|gb|DR313132.1|DR313132
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017378|gb|DR313124.1|DR313124
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017384|gb|DR313130.1|DR313130
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86081473|gb|DR377230.1|DR377230
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017367|gb|DR313113.1|DR313113
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAA
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAA
EST: gi|86017377|gb|DR313123.1|DR313123
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017372|gb|DR313118.1|DR313118
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017361|gb|DR313107.1|DR313107
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGNGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC
EST: gi|86017365|gb|DR313111.1|DR313111
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGATATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017375|gb|DR313121.1|DR313121
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017363|gb|DR313109.1|DR313109
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017385|gb|DR313131.1|DR313131
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|47827952|gb|CK117636.1|CK117636
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017370|gb|DR313116.1|DR313116
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017358|gb|DR313104.1|DR313104
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017368|gb|DR313114.1|DR313114
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGWTAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATT
EST: gi|86017373|gb|DR313119.1|DR313119
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017380|gb|DR313126.1|DR313126
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017364|gb|DR313110.1|DR313110
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017360|gb|DR313106.1|DR313106
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCNACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86077954|gb|DR373711.1|DR373711
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017383|gb|DR313129.1|DR313129
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017366|gb|DR313112.1|DR313112
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017356|gb|DR313102.1|DR313102
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|47828178|gb|CK117862.1|CK117862
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017359|gb|DR313105.1|DR313105
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCA
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCA
EST: gi|86017382|gb|DR313128.1|DR313128
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
EST: gi|86017379|gb|DR313125.1|DR313125
EST:     TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAG                         AGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT
genomic: TCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGgtatgagttt ... ttatgagcagAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGT