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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTGGCGTCAATGGACTATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGgtttaaaaagtctcttacttttatcattaaagacttagcctttcgtttgttttatctgatctgcgtttgaaatttggtacctttccttgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G21870.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os08g01410.1 (Oryza sativa), 5'ss of exon 1
TCTGTGGCGTCAATGGACTATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGgtttaaaaagtctcttacttttatcattaaagacttagcctttcgtttgttttatctgatctgcgtttgaaatttggtacctttccttgtttgcag-----
   |  | |  |     | |   || || |  |  |  |||| || ||||||||||| || ||||| || || ||||||||||||||||||||||| ||||||  ||   |  | || | ||    |      |||  ||   |        |||      | ||||      ||  | | ||||  |  |||        
CAAGATGGGAGACGTTGCCACCATCCGAGCCGTTCTGGCGATCCTCCAATGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAATGGATCTTCCAGgttccaattcttccataatcttcctctccttttcttcccccccccccccccctattcttcttccgttacttccttttt-cttttctgtccttgagatgatc

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G127591_T03 (Zea mays), 5'ss of exon 1
TCTGTGGCGTCAATGGACT---ATGTTCAGATCTCTGTTATCG--ATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGgtttaa----aaagtctcttacttttatcattaaagacttagcctttcgtttgttttatctgat-ctgcgtttgaaatttggtacctttccttgtttgcag--------------------------------------
     |||| |    | |         | |  | | ||  |||  || || || |||||||| || ||||| || || |||||||||||||| |||||||| ||||||||     |   | |  ||  ||   |||  |    |  |||     | ||  |  || ||| || |   ||       |   |||| ||  |||| |                                       
-----GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatc-ttccgccgcggatctggat-gtcagatgcttctcctgcccggctgctacttttctcctttggaatatctaactaaattcgtccatactgcttaccattatag

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
TCTGTGGCGTCAATGGACT---ATGTTCAGATCTCTGTTATCG--ATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGgtttaa----aaagtctcttacttttatcattaaagacttagcctttcgtttgttttatctgat-ctgcgtttgaaatttggtacctttccttgtttgcag-
     |||| |    | |         | |  | | ||  |||  || || || |||||||| || ||||| || || |||||||||||||| |||||||| ||||||||     |   | |  ||  ||   |||  |    |  |||     | ||  |  || ||| || |   ||       |   |||| ||  |||| |  
-----GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatc-ttccgccgcggatctggat-gtcagatgcttctcctgcccggctgctacttttctcctttggaat

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 1
-TCTGTGGCGTCAATGGACTATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGgttta-----aaaagtctcttacttttatcattaaagacttagcctttcgtttgttttatctgatctgcgtttgaaatttggtacct-ttccttgtttgcag
   | |   | |||||||   |||| |||||||| ||  | || ||||||||||||| ||| || || ||||| || ||||| ||||| |||||||| |||||||         | |   ||||     || |  || | |||  |   | ||| | |  | |  ||  |   |    |||| | |   ||||||  |     
GGTTATT-TGCCAATGGAGCGTGTTTAGATCTCTCTTGGCAATACTTCAATGGTGGGCTTTCAATGTCACTGTCATTATCATCAACAAGTGGATCTTCCAGgtttctctttgttatttctttacccaattcttataataattattcacacttttttatggtttcttcctcccctcttgtttgttccaaattccttcataat--

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
TCTGTGGCGTCAATGGACTATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGgtttaaaaagtctcttacttttatcattaaagacttagcctttcg---tttgttttatctgatctgcgtttgaaatttggtacctttccttgtttgcag---
|||     | || ||||    ||| ||||||||| |  | || |||||||||||||| || || || || || || ||||||||||| ||||||||||||||||      |||  |  |   ||  | |||  |     ||||||   |||||   ||    |     |    ||||| ||    |||  | | || |    
TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctt--tctgcttttcagattctcaaatcccccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg