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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCCAACCACGTTTTCACAGAGAGCCACACCACCTTCATCAAACTTCTTCATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAGgtacgtgatttcttcatcagatctttcctcacagttcgattacgtcttcttcctcagactttgattgttggatcgaattttcaattgatttttgatatgttcgcgttctgactttttttccag

Basic information

species Arabidopsis thaliana
transcript AT1G20260.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471926|gb|EG514518.1|EG514518
EST:     ATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAG                         GGATTGTGGAGTGGTTTGGTTTGATTTGATTTCGATCTGTGACAATGGTGG
genomic: ATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAGgtacgtgatt ... ttttttccagGGATTGTGGAGTGGTTTGGTTTGATTTGATTTCGATCTGTGACAATGGTGG
EST: gi|125016729|gb|EL088998.1|EL088998
EST:     ATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAG                         GGATTGTGGAGTGGTTTGGTTTGA
genomic: ATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAGgtacgtgatt ... ttttttccagGGATTGTGGAGTGGTTTGGTTTGA
EST: gi|116483049|gb|EG525641.1|EG525641
EST:     TCATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAG                         GGATTGTGGAGTGGTTTGGTTTGATTTGATTTCGATCTGTGACAATGGTGG
genomic: TCATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAGgtacgtgatt ... ttttttccagGGATTGTGGAGTGGTTTGGTTTGATTTGATTTCGATCTGTGACAATGGTGG
EST: gi|164079596|gb|ES006785.1|ES006785
EST:     TCATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAG                         GGATTGTGGAGTGGTTTGGTTTGATTTCGATTTCGAT
genomic: TCATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAGgtacgtgatt ... ttttttccagGGATTGTGGAGTGGTTTGGTTTGATTT-GATTTCGAT
EST: gi|116424900|gb|EG467492.1|EG467492
EST:     TCATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAG                         GGATTGTGGAGTGGTTTGGTTTGATTTGATTTCGATCTGTGACAATGGTGG
genomic: TCATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAGgtacgtgatt ... ttttttccagGGATTGTGGAGTGGTTTGGTTTGATTTGATTTCGATCTGTGACAATGGTGG
EST: gi|164222933|gb|ES147394.1|ES147394
EST:     ATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAG                         GGATTGTGGAGTGGTTTGGTTTG
genomic: ATAACAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAGgtacgtgatt ... ttttttccagGGATTGTGGAGTGGTTTGGTTTG
EST: gi|124744409|gb|EH835571.1|EH835571
EST:     CAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAG                         GGATTGTGGAGTGGTTTGGTTTGATTTGAATTTCGATCTGTGACAATGGTG
genomic: CAAATCACATTTCTCTCTCTTCTCTGCTTGAATCCATTACAGAGgtacgtgatt ... ttttttccagGGATTGTGGAGTGGTTTGGTTTGATTTGA-TTTCGATCTGTGACAATGGTG