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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTACTTGGACTCCAACCCGCAGCTCTTATCGATAACGTCGCTCCTGTTGATTGGTCTTTACTCGATCAAATTCCCGGTGATCGCGGTGGCTCCATTGCCgtaagccattcttctctgtttttagcgttatttgagtgttttcagtgaattatctcgttttttgatgtgggtttaagcaaaagtttgaatcttcctttggtatcggaatctggatttgaattgttattgtacttggcggatcttttgtgattctag

Basic information

species Arabidopsis thaliana
transcript AT1G19600.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G19600.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA17G37040.1 (Glycine max), 5'ss of exon 1
CGTACTTGGACTCCAACCCGCAGCTCTTATCGATAACGTCGCTCCTGTTGATTGGTCTTTACTCGATCAAATTCCCGGTGATCGCGGTGGCTCCATTGCCgtaagccattcttctctgtttttagcgttatttgagtgttttcagtgaattatctcgttttttgatgtgggtttaagcaaaagtttgaatcttcctttggtatcggaatctggatttgaattgttattgtacttggcggatcttttgtgattctag
 || ||||| ||||||||  |||| ||| | ||  |||| || | ||| |||||||| || |||||||||||||||||||| |  |||||||||||  | |||  |    | | ||  |  ||  | |  |||      | |   |    |   | ||||||   | |   | |||  |      ||  |  |   ||  |||                                                     
-GTTCTTGGGCTCCAACCTTCAGCACTTGTTGACCACGTGGCACGTGTGGATTGGTCCTTGCTCGATCAAATTCCCGGTGAACATGGTGGCTCCATACCTGtactctccccctatcactacttttcttcctttttactatatttctactctccattgtttttattttttattataactagg----tgggttcttacttcttataa---------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874861|gb|AU235692.1|AU235692
EST:     ATTGGTCTTTACTCGATCAAATTCCCGGTGATCGCGGTGGCTCCATTGCC                         GTGCAAAAGGATGAGTTAGAGCACATGCTAAAAGAGCTTGATGCACATATC
genomic: ATTGGTCTTTACTCGATCAAATTCCCGGTGATCGCGGTGGCTCCATTGCCgtaagccatt ... gtgattctagGTGCAAAAGGATGAGTTAGAGCACATGCTAAAAGAGCTTGATGCACATATC
EST: gi|125019647|gb|EL091916.1|EL091916
EST:     CTCGATCAAATTCCCGGTGATCGCGGTGGCTCCATTGCC                         GTGCAAAAGGATGAGTTAGAGCACATGCTAAAAGAGCTTGATGCACATAT
genomic: CTCGATCAAATTCCCGGTGATCGCGGTGGCTCCATTGCCgtaagccatt ... gtgattctagGTGCAAAAGGATGAGTTAGAGCACATGCTAAAAGAGCTTGATGCACATAT