1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTGCTTCCCTTGCTTGATTAGATCATTTTTGTGATTCTGGATTTTGTGGGGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCAAGgtaaagggacgatctttagcttctttgcagctgcaattacttgataattccatgtctggattctaatttcatggttttttgaaaaaaaaaacaaaaaaca...
species | Arabidopsis thaliana |
transcript | AT1G19270.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCAAG GCTGCATTGCCGTATGAGCAGATAGTTTTATTTAGGCATTATGGGTTGGTTEST: gi|116408607|gb|EG451199.1|EG451199
genomic: GGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCAAGgtaaagggac ... gattttgcagGCTGCATTGCCGTATGAGCAGATAGTTTTATTTAGGCATTATGGGTTGGTT
EST: GGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCAAG GCTGCATTGCCGTATGAGCAGATAGTTTTATTTAGGCATTATGGGTTGGTTEST: gi|116435621|gb|EG478213.1|EG478213
genomic: GGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCAAGgtaaagggac ... gattttgcagGCTGCATTGCCGTATGAGCAGATAGTTTTATTTAGGCATTATGGGTTGGTT
EST: GGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCAAG GCTGCATTGCCGTATGAGCAGATAGTTTTATTTAGGCATTATGGGTTGGTT
genomic: GGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCAAGgtaaagggac ... gattttgcagGCTGCATTGCCGTATGAGCAGATAGTTTTATTTAGGCATTATGGGTTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTTCCCTTGCTTGATTAGATCATTTTTGTGATTCTGGATTTTGTGGGGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCAAGgtaaagggacgatctttagcttctttgcagctgcaattacttgataattccatgtctggattctaatttcatggttttttgaaaaaaaaaacaaaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa