1 5' 3' | 2 5' 3' |
GGAAAACTTAATCTCAGGGCACACCAAGAAGGAGGCTTTTTCGCTGAAACTTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCTCCCTCCAACCTgtagctctcttcctcgtttatttgcatctatctatgtcttcctttgatttggaatcttgttgatatagtgtcttcattagtttccgattttgcattttga...
species | Arabidopsis thaliana |
transcript | AT1G19130.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCTCCCTCCAACCT TTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTGCTTCCATCTGEST: gi|125015824|gb|EL088093.1|EL088093
genomic: TTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCTCCCTCCAACCTgtagctctct ... atctctgcagTTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTGCTTCCATCTG
EST: CTCCCTCCAACCT TTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTGCTTCCATCTGEST: gi|116462142|gb|EG504734.1|EG504734
genomic: CTCCCTCCAACCTgtagctctct ... atctctgcagTTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTGCTTCCATCTG
EST: TTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCTCCCTCCAACCT TTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTGCTTCCATCTG
genomic: TTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCTCCCTCCAACCTgtagctctct ... atctctgcagTTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTGCTTCCATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAACTTAATCTCAGGGCACACCAAGAAGGAGGCTTTTTCGCTGAAACTTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCTCCCTCCAACCTgtagctctcttcctcgtttatttgcatctatctatgtcttcctttgatttggaatcttgttgatatagtgtcttcattagtttccgattttgcattttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttcctt