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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgtttgttttgttcatccatctctaactcttctctgtttcggtttctctagggctttgttacgttggtctatatatgttcatcagtcataacactaaatccttatttggttttatttcaaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G17710.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17710.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA07G01410.1 (Glycine max), 5'ss of exon 1
AATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgt---------ttgttttgttcatccat-ctctaactcttctctgtttcggtttctctagggctttgttacgttg-gtctatatatgttcatcagtcataacactaaatccttatttggttttatttcaaaacag-----------------------
 ||  ||||||| ||||| || || |||||| | || ||| | |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||         ||| | | ||    |||  |||   | |||  |     ||||     | | | || |||  ||     ||||  | | |||    |||     || |  | |   |   ||        |                           
CATTGTCGATGTCGACAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagaagcatttggtgtcttgtcacatgttctgttttttcaataccatggttctcaaaagtcctttttatatttcaaatataactttgcatactgcattgtcttataggcatgaataacttagccgaggattttgtgtttcggttttggatttatag

upper sequence: AT1G17710.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G20820.1 (Glycine max), 5'ss of exon 1
AATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgtttgttttgttcatccatctctaactcttctctgtttcggtttctctagggctttgttacgttggtctatatatg-ttcatcagtcataacactaaatccttatttggttttatttcaaaacag
 ||  ||||||| ||||| || || |||||| | || ||| | |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||  |  ||     || || |||   | || | |||||  |||| | |     | |||  |       || ||    ||| |||  |||     |   |  || ||                   
CATTGTCGATGTCGACAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcatttcgtgtc-atgtctttgt-ttgtttgttt--gtttttttttttttctgtagcaaaaacttagatgcaattcgtca--catgtttttgtgttgttctt-------------------

upper sequence: AT1G17710.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA07G01430.1 (Glycine max), 5'ss of exon 1
AATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgtttgt-tttgttcatccatctctaactcttctctgtttcggtttctctagggctttgttacgttggtctatatatgttcatcagtcataacactaaatccttatttggttttatttcaaaacag
 ||  ||||||| || || || || |||||| | || ||| | |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||  |  |||| |    | ||| |   | ||   | |||| ||   |  |   ||| ||| |  |  |      |||||| |||||  |     | ||||   ||                    
CATTGTCGATGTCGATAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcatttggtgtcacgtctttgggtttttcttttttcagtagat--aaaacttggttgcaat--ttgtcgcatgttc-tcagtattgttcttcaatcaaaat--------------------

upper sequence: AT1G17710.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G20810.1 (Glycine max), 5'ss of exon 1
AATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgt--ttgttttgt-tcatc---catctctaac-tcttctctgtttcggtttc--tctagggctttgttacgttggtctatatatg--ttca---tcagtcataacactaa---atccttatttggtttt--atttcaaaacag---
 ||| ||||||| ||||| || || |||||||| |||||  | |||||||| |||||||| |||||||| || || || |||||||||||||||||||||||     |||||| ||||    |||| || || |  ||| | |||   |||   |||      || | || |||    ||  |||  || |   | | |   |  | |||   |  ||| |||| ||||   |||   |       
CATCGTCGATGTCGACAGTGACAACTGGGTCGTCGATGATTTGGGTTTCACCGATTTGTTTAACCAGCTCCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattttgtgtcatgtcacatcactcacatgctctttattttttttttaatctgaaatatt-taactttgcataatgcatggttttaattttaatggcatgattaaccgagtcttttttgtttttcggttttggatttatag

upper sequence: AT1G17710.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA15G02660.1 (Glycine max), 5'ss of exon 1
AATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgtttgttttgttcatccatctctaactc----ttctctgtttcggtttctctagggctttgttacgttggtctatatatgttcatcagtcataacactaaatccttatttggttttatttcaaaacag
 ||| ||||    ||||| ||||| ||||| || || ||  | ||||||| ||| |||||||| | ||| || || ||||||||||||||| ||||||||||  | |||  | ||     || ||       |||||  | || |||  |||| | | |  ||   ||  ||| |   | |  |  |  ||||     | ||                          
CATCGTCGACTGTGACAGTGATAACTGGGTTGTTGACGAGTTGGGTTTCAATGAATTGTTCAATCGGCTCCTTCCCACAATGCCTTGGAACACTCTCATGgtaagcttt--tgatttgcttcaaatatatgtttctcattgtcagttgttctatgccctatttttttt--tcttttcttttcaagaaaacatatttaaagatgt------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406438|gb|EG449030.1|EG449030
EST:     CTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATG                         AATCGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTGAAGAAATC
genomic: CTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgtttgttttg ... ttcaaaacagAATCGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTGAAGAAATC