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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTGAAGCAGCAGCAGCAGCAGCAACAAGTTATGATGCAGCAAGCTCTTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAGgtttgctctattcttcttccatttccatgctcgatttgggtttctaggctctttttcccaagctcgatttcactggtttttctctcttttttgttgtata...

Basic information

species Arabidopsis thaliana
transcript AT1G17370.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17370.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 1
GAGGTTGAAGCAGCAGCAGCAGCAGCAACAAGTTATGATGCAGCAAGCTCTTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAGgtttgctctattcttcttccatttccatgctcgatttgggtttctaggctctttttcccaagctcgatttcactggtttttctctcttttttgttgtata-
|  |    |   || | ||||||||||||||| | ||||||||||||||||| | || ||||||||||||||||| |||||||||||||| || || |||||| |  |       ||  | | ||| |   ||||    | ||| |   | | ||  |      |        | || | || |  |||  | ||      
GCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTCTGATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGTCTCCTTGCTCCTCCTCAGgttggaccccacacactctc-tctccgtttccgatcactgcttcgatcttatcttatcgtgttgcctcgatcttcgtgtctcgcattttgctatttcgggg

upper sequence: AT1G17370.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 1
GAGGTTGAAGCAGCAGCAGCAGCAGCAACAAGTTATGATGCAGCAAGCTCTTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAGgtttgctctattcttcttccatttccatgctcgatttgggtttctaggctct-ttttcccaagctcgatttcactg-gtttttctctcttttttgttgtata
|  |  | |||||||||||||||| ||||||| | | ||||||||||||||| | || ||||||||||||||||| ||||| |||||||| || || |||||| |  |   || | | |  | ||  | ||| ||||  | |  |||  ||  | ||  |  | || ||    ||  || | || |  |||    ||     
GCTGAAGCAGCAGCAGCAGCAGCAACAACAAGCTCTTATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGgttcggacccctcatatactctctctct-ctccatttccgatcatagcttcgatcttatcgtgttctatcgatcttcgtgtctcccattttgccatttcgg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116486725|gb|EG529317.1|EG529317
EST:     GCCCCGCCACAG                         ATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
genomic: GCCCCGCCACAGgtttgctcta ... ctttttgcagATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
EST: gi|116386087|gb|EG428679.1|EG428679
EST:     TTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAG                         ATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
genomic: TTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAGgtttgctcta ... ctttttgcagATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
EST: gi|124706133|gb|EH797535.1|EH797535
EST:     CAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAG                         ATAGAACCAATCCCAAGTGGAAATCTCCCCC-TGGTTTTGATCCAAGTACT
genomic: CAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAGgtttgctcta ... ctttttgcagATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
EST: gi|124828874|gb|EH913710.1|EH913710
EST:     TCTCCTTGCCCCGCCACAG                         ATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
genomic: TCTCCTTGCCCCGCCACAGgtttgctcta ... ctttttgcagATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
EST: gi|116386137|gb|EG428729.1|EG428729
EST:     TTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAG                         ATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
genomic: TTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAGgtttgctcta ... ctttttgcagATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
EST: gi|116477129|gb|EG519721.1|EG519721
EST:     TTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAG                         ATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
genomic: TTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAGgtttgctcta ... ctttttgcagATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT
EST: gi|125221163|gb|EL235248.1|EL235248
EST:     CTACCATCCTGGTCTCCTTGCCCCGCCACAG                         ATAGAACCAATCCCAAGTGGAAATCTCCCCC-TGGTTTTGATCCAAGTACT
genomic: CTACCATCCTGGTCTCCTTGCCCCGCCACAGgtttgctcta ... ctttttgcagATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACT