1 5' 3' |
GAAAGCTCTGCAGTACTCTTACAGAGATAGGCGCAACAAGAAACGTGAGATGAGAGGTCTCTGGATCGAGCGCATCAACGCCGGTTCTCGTCAGCACGGTgtacgttttccccccaatattgattagatttttgcctatttgcttcccgtcactgctaattgcattgattcgataaatcatgattagtttataaataaaa...
species | Arabidopsis thaliana |
transcript | AT1G16740.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAGAGGTCTCTGGATCGAGCGCATCAACGCCGGTTCTCGTCAGCACGGT GTGAACTACGGGAACTTCATCCATGGACTGATGAAGGAGAACATCCAGCTGEST: gi|164225772|gb|EL974657.1|EL974657
genomic: TGAGAGGTCTCTGGATCGAGCGCATCAACGCCGGTTCTCGTCAGCACGGTgtacgttttc ... cttgaaacagGTGAACTACGGGAACTTCATCCATGGACTGATGAAGGAGAACATCCAGCTG
EST: TGAGAGGTCTCTGGATCGAGCGCATCAACGCCGGTTCTCGTCAGCACGGT GTGAACTACGGGAACTTCATCCATGGACTGATGAEST: gi|86074904|gb|DR370661.1|DR370661
genomic: TGAGAGGTCTCTGGATCGAGCGCATCAACGCCGGTTCTCGTCAGCACGGTgtacgttttc ... cttgaaacagGTGAACTACGGGAACTTCATCCATGGACTGATGA
EST: TGAGAGGTCTCTGGATCGAGCGCATCAACGCCGGTTCTCGTCAGCACGGT GTGAACTACGGGAACTTCATCCATGGACTGATGAAGGAGAACATCCAGCTG
genomic: TGAGAGGTCTCTGGATCGAGCGCATCAACGCCGGTTCTCGTCAGCACGGTgtacgttttc ... cttgaaacagGTGAACTACGGGAACTTCATCCATGGACTGATGAAGGAGAACATCCAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGCTCTGCAGTACTCTTACAGAGATAGGCGCAACAAGAAACGTGAGATGAGAGGTCTCTGGATCGAGCGCATCAACGCCGGTTCTCGTCAGCACGGTgtacgttttccccccaatattgattagatttttgcctatttgcttcccgtcactgctaattgcattgattcgataaatcatgattagtttataaataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa