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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTGTAGATGATGAAGATATCTTCGATGTTGCCAGTGAGATTTTGCCCGACAATCGAATTCCGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAGgtgaggctaatctagggttcatgattcggaaattcctgctcaattttgagcgatcagattctgaatttcactggaattgtttttttctgagtgtatag

Basic information

species Arabidopsis thaliana
transcript AT1G15730.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15730.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G180418_T03 (Zea mays), 5'ss of exon 6
CGTTGTAGATGATGAAGATATCTTCGATGTTGCCAGTGAGATTTTGCCCGACAATCGAATTCCGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAGgtgaggctaatctagggttcatgattcggaaattcctgctcaattttgagcgatcagattctgaatttcactgg--aattgtttttttctg--agtgtatag---
||  |  || |  || ||   ||  | ||| |  |    |||   |||||||||||| || || ||||| || |||||||| ||||| |||||||| |||||  |  |   |  |    | | |         | | | |    || | |    | | ||  ||| | ||   |    | |  ||   |||  |  |  |||   
CGCGGCGGAGGCGGAGGAGTGCTCGGGTGTGGAGACGCTGATCCCGCCCGACAATCGCATCCCCGCCACCATCATCACCGGCTTCCTCGGCTCTGGCAAGgtccgcgtccgcctg---ccctaacctcagtgctaccgttgg--ttagggtacgcggtttgggaagtccatgtgttgctagacttacactggaaacgattagcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116433950|gb|EG476542.1|EG476542
EST:     ACAATCGAATTCCGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAG                         ACAACATTGCTAAACCATATATTGACGGGAGATCATGGGAAGCGCATAGCC
genomic: ACAATCGAATTCCGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAGgtgaggctaa ... gagtgtatagACAACATTGCTAAACCATATATTGACGGGAGATCATGGGAAGCGCATAGCC
EST: gi|116474224|gb|EG516816.1|EG516816
EST:     ACAATCGAATTCCGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAG                         ACAACATTGCTAAACCATATATTGACGGGAGATCATGGGAAGCGCATAGCC
genomic: ACAATCGAATTCCGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAGgtgaggctaa ... gagtgtatagACAACATTGCTAAACCATATATTGACGGGAGATCATGGGAAGCGCATAGCC
EST: gi|116474225|gb|EG516817.1|EG516817
EST:     TCCGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAG                         ACAACATTGCTAAACCATATATTGACGGGAGATCATGGGAAGCGCATAGCC
genomic: TCCGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAGgtgaggctaa ... gagtgtatagACAACATTGCTAAACCATATATTGACGGGAGATCATGGGAAGCGCATAGCC