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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTAGCTCTGTGATGGGTAATGGTTTCAATATCGATCTGATTGATCCTCCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctttttccattttctctcctaccttgttggattgctgaagttgtcttttttacttcatgtattcaatgatccaagtgtggtctagtttaaagg...

Basic information

species Arabidopsis thaliana
transcript AT1G15140.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15140.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G25940.1 (Glycine max), 5'ss of exon 1
AGCTTAGCTCTGTGATGGGTAATGGTTTCAATATCGATCTGATTGATCCTCCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt---tttccattttctctcctaccttgttggattgctgaagttgtcttttttacttcatgtattcaatgatccaagtgtgg--tctagtttaaagg
| || |||   || ||||| || || ||||| ||||||| |||  | |||||  || | | |   |||||| |  | ||||||||||||||||||||||||| ||  ||    ||| | ||||  | || |   | ||  |   |  |   | ||| || ||    ||  || | |  ||  || ||  |  | ||| |||    
AACTCAGCCAAGTCATGGGAAACGGATTCAACATCGATCGGATCCACCCTCCGAAGAATTTTGGAACCGTTCTCGTCTTCGCCACTGGATCTGGAATTAGgtcagttctccgatttacctttttacccccaaaattttatagaacgtagaatttctgttgtaacaaattcatgctac-atggaaatgaaggttttagatta----

upper sequence: AT1G15140.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G41310.1 (Glycine max), 5'ss of exon 1
AGCTTAGCTCTGTGATGGGTAATGGTTTCAATATCGATCTGATTGATCCTCCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctttttccattttctctcctacctt---gttggattgctgaa-gttgtcttttttacttcatgtattcaatgatccaagtgtggtctagtttaaagg-
| || |||   || ||||| || || ||| | ||||||| |||  | ||||| ||| | | |   |||||| |  | ||||||||||||||||||||||||| ||   || ||| ||||||  |  ||||      ||  ||    ||| || |  ||| ||   | |  || ||| || | || | |   |  || |   ||  
AACTCAGCCAAGTCATGGGAAACGGATTCGACATCGATCGGATCCACCCTCCCGAGAATTTTGGAACCGTTCTCGTCTTCGCCACTGGATCTGGAATTAGgtcag---ttcttcaattttccattatacccccaaattttatactagaacgtagaatttcttttgtaacatactca-tgctacacg-gaaatgaaggtcttagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124721890|gb|EH813292.1|EH813292
EST:     CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGG
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGG
EST: gi|86017447|gb|DR313193.1|DR313193
EST:     CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: gi|124821087|gb|EH905953.1|EH905953
EST:     TCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: TCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: gi|116475121|gb|EG517713.1|EG517713
EST:     CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: gi|86017445|gb|DR313191.1|DR313191
EST:     TGAGGAATATCCCACCGGTTTTGATTTTCGCCACTGGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: TGAGGAATATCCCACCG-TTTTGATTTTCGCCACTGG-ATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: gi|116475122|gb|EG517714.1|EG517714
EST:     CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA