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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTCACGGTTCCGGTCTCCGGCGAGTTCTGTTATTGTCGTTCTGTGTCGCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaactcgttagggtcgaaatcgatcaatcttattttagctcgttgattattttctctcgacattgctcgattctgtttgttcgagattgtttctattctcggaatcctggttggtgatgcgtttgcaattattggaaatttatagaaatgtagctgatagaactctaacattttcgaattag

Basic information

species Arabidopsis thaliana
transcript AT1G14360.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86025305|gb|DR321058.1|DR321058
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025311|gb|DR321064.1|DR321064
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025290|gb|DR321043.1|DR321043
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025296|gb|DR321049.1|DR321049
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATG--AAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|116432753|gb|EG475345.1|EG475345
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025306|gb|DR321059.1|DR321059
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025291|gb|DR321044.1|DR321044
EST:     CTGGGATCTGGGAMAGCTTACATATACMACGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: CTGGGATCTGGG-CAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025309|gb|DR321062.1|DR321062
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025304|gb|DR321057.1|DR321057
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025302|gb|DR321055.1|DR321055
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025312|gb|DR321065.1|DR321065
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025295|gb|DR321048.1|DR321048
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGAT--GAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025298|gb|DR321051.1|DR321051
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025300|gb|DR321053.1|DR321053
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025294|gb|DR321047.1|DR321047
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025303|gb|DR321056.1|DR321056
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025293|gb|DR321046.1|DR321046
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025307|gb|DR321060.1|DR321060
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025299|gb|DR321052.1|DR321052
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025310|gb|DR321063.1|DR321063
EST:     GSTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATAGGAAGAGATTCGAGSATCTTGSATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025292|gb|DR321045.1|DR321045
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
EST: gi|86025308|gb|DR321061.1|DR321061
EST:     GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTT                         GTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT
genomic: GCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaa ... ttcgaattagGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCTCACGGTTCCGGTCTCCGGCGAGTTCTGTTATTGTCGTTCTGTGTCGCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCTTgtaagtaaaactcgttagggtcgaaatcgatcaatcttattttagctcgttgattattttctctcgacattgctcgattctgtttgttcgagattgtttctattctcggaatcctggttggtgatgcgtttgcaattattggaaatttatagaaatgtagctgatagaactctaacattttcgaattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA