1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACGTTGATACTCTCTCTCTCTCGACGGAAAATTCTTCCTCGGAGATATGGTGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttttggtttcatctgtttctgagctatggggatgcattgataattttagattctagggtttttgttaccgatgagtctgattgaatgaagaaacaaacttgtag
species | Arabidopsis thaliana |
transcript | AT1G14300.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGGAAGAGCTTGTCGAATTTTTTGTCATCTCCTTCACCGCCT GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAAEST: gi|125090837|gb|EL148670.1|EL148670
genomic: CTGGAAGAGCTTGTCGAA-TTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
EST: CTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCT GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAAEST: gi|86074197|gb|DR369954.1|DR369954
genomic: CTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
EST: TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCT GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAAEST: gi|47828406|gb|CK118090.1|CK118090
genomic: TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
EST: TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCT GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAAEST: gi|19877399|gb|AU238230.1|AU238230
genomic: TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
EST: TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCT GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
genomic: TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGTTGATACTCTCTCTCTCTCGACGGAAAATTCTTCCTCGGAGATATGGTGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttttggtttcatctgtttctgagctatggggatgcattgataattttagattctagggtttttgttaccgatgagtctgattgaatgaagaaacaaacttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT