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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCTCTATAGGGGCAAGTGAGAGGTTACTGTCTCTTTCTTCTTTCAGACACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATCgtaagtactcgtctcttgatccaatttgtagcaaaagatctaaatttcagaatctacccaaatctcgaaagtcactgtctcagttcgagcaaagtttttt...

Basic information

species Arabidopsis thaliana
transcript AT1G13560.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070080|gb|DR365837.1|DR365837
EST:     CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATC                         TGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
genomic: CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATCgtaagtactc ... tttgaatcagTGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
EST: gi|86070077|gb|DR365834.1|DR365834
EST:     CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATC                         TGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
genomic: CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATCgtaagtactc ... tttgaatcagTGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
EST: gi|86070082|gb|DR365839.1|DR365839
EST:     CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATC                         TGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
genomic: CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATCgtaagtactc ... tttgaatcagTGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
EST: gi|86070083|gb|DR365840.1|DR365840
EST:     CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATC                         TGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
genomic: CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATCgtaagtactc ... tttgaatcagTGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
EST: gi|86070078|gb|DR365835.1|DR365835
EST:     CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATC                         TGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
genomic: CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATCgtaagtactc ... tttgaatcagTGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
EST: gi|152034149|gb|BP868711.2|BP868711
EST:     CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATC                         TGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC
genomic: CACTCGAGACGAGAAAGGCTCGTATCTGATTTTACCGCCACCGGACCATCgtaagtactc ... tttgaatcagTGTGATAGACAATAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTC