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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAACTCTCTGCCTCTTCTGCTTACATCATACAACAAGCTTCTCTCTCTGGTAGCCATGGCTTCGGCTACTTTCTCTGTGGCCAAACCATCTCTTCAGgttttgtttcatcttcctaaccacattatctgattgcccttcacacaagttttatcatcatctcataaatactctcatgttttactttttcagggtttttctgagttctcag

Basic information

species Arabidopsis thaliana
transcript AT1G12900.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G12900.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA19G28240.1 (Glycine max), 5'ss of exon 1
-TTACAACTCTCTGCCTCTTCTGCTT-ACATCATACAACAAGCTTCTCTCTCTGGTAGCCATGGCTTCGGCTACTTTCTCTGTGGCCAAACCATCTCTTCAGgttttgt------ttcatcttcctaaccacattatctgattgc--ccttcac--acaagttttatcatca--------tctcataaatactc-tca-tgttttactttttcagggtttttctgagttctcag----------------------------------------
 ||||||  |||| | | | |||||| || |  | |   |      ||  |   | | | ||||||||||||||| ||||||| ||||||||| | |||||||||           | |  |    |  ||| ||  |   || |  | ||||   | ||  |  ||||| |        | | || |  | |  ||| ||   | || |   |  | |    | | || | |                                         
CTTACAAGCCTCTAC-TATACTGCTTCACCTTCTGCTCTAGAAAATTCAGTGCTGAAAC-ATGGCTTCGGCTACTCTCTCTGTAGCCAAACCAGCCCTTCAGgttcaacaagctacttacttattcattcacttttccacgtttcaactttcattaataacatgcatcattagaaagttgtgttattagcatttatcagtgccatgctgtgcaaaagctaaggtaactttttataatagttttttttttttctttcattccttggtttattcag

upper sequence: AT1G12900.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G04940.1 (Glycine max), 5'ss of exon 1
-TTACAACTCTCTGCCTCTTCTGCTTACATCATACAACAAGCTTCTCTCTCTGGTAGC-CATGGCTTCGGCTACTTTCTCTGTGGCCAAACCATCTCTTCAGgttt--tgtttcatcttcctaaccacattatctgattgcccttcacacaagttttat-catcatctcataa--atactctcatgttttactttttcagggtttttctgagttctcag-----------------------------------------------
 ||||||  |||| | ||| |||||| || | |              ||  ||||    |||||||||||||||| ||||||| ||||||||| | |||||||||     |   |       |  ||| ||  |   || |   |  ||  | |   || |||||||  | |    |||| | |   ||||    | |    || | |  |  |    |                                               
CTTACAAGGCTCTAC-TCTACTGCTT-CACCTTCTGCTCTAGAAAATTCAGTGGTGATACATGGCTTCGGCTACTCTCTCTGTAGCCAAACCAGCCCTTCAGgttcaacatgctactcattcattcacttttccatgtttcaactttcattaataacatgcatcatcagaaagttgtactattagcatttagcagtgccatattgtgcaaaagttaaggtaactttttataatagtgttttttttttcattccttggtttattcag

upper sequence: AT1G12900.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv14s0068g00680.t01 (Vitis vinifera), 5'ss of exon 1
--TTACAACTCTCTGCCTCTTCTGCT-TACATCATACAACAAGCTTCTCTCTCTGGTAGCCATGGCTTCGGCTACTTTCTCTGTGGCCAAACCATCTCTTCAGgttttgtttcatcttcctaaccacattatctgattgcccttcacacaagttttatcatcatctcataaatactctcatgttttactttttcagggtttttctgagttctcag
       | |  |   ||  | |||    | |  | | || |   |   ||| |   |   ||||| ||||||||| ||||||| |||||||||||||||||||     || |  | | || || || |  ||| | | | |||     |  |||| |  ||   |  ||      ||  ||   || |  | |     |||  | ||       
GAAGGGGATTTCCCAACTGCTTTGCCACTCCTTTTGCTACTATACTGCTTCTTTCCAA---ATGGCCTCGGCTACTCTCTCTGTAGCCAAACCATCTCTTCAGg-----ttcctgcatgcttactac-tcttcttactactctttttttatctttt-tgttctctttgtagtagtacttgtgacataatgatactctactttgttcag-------