1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGGGTGGTGTCTCTTCCAGTGAAAGACTCTGCTTCTTCGTTATGGAATCGATTACAAGAGCAGATCTCTAAGCATTCCTTTGATACTCCAGTTTATCGGgtactctgatttttgctcgatttggtcttattgcaaaatttagcacagatcttatactatctcttgctactttcgtgtctacgattctaattacgatctaattccgtgagttttggtttcaatttcgcag
species | Arabidopsis thaliana |
transcript | AT1G12840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTTTGATACTCCAGTTTATCGG TTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTCEST: gi|222358097|gb|GH718178.1|GH718178
genomic: CCTTTGATACTCCAGTTTATCGGgtactctgat ... aatttcgcagTTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTC
EST: GATTACAAGAGCAGATCTCTAAGCATTCCTTTGATACTCCAGTTTATCGG TTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTCEST: gi|124963007|gb|EL037371.1|EL037371
genomic: GATTACAAGAGCAGATCTCTAAGCATTCCTTTGATACTCCAGTTTATCGGgtactctgat ... aatttcgcagTTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTC
EST: GATACTCCAGTTTATCGG TTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTCEST: gi|124891955|gb|EH970857.1|EH970857
genomic: GATACTCCAGTTTATCGGgtactctgat ... aatttcgcagTTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTC
EST: TCCAGTTTATCGG TTTAACATTCCTAATCTTCGTGTTTGGAACCTTAGATTCTCTACTCGCTCT
genomic: TCCAGTTTATCGGgtactctgat ... aatttcgcagTTTAACATTCCTAATCTTCGTG-TTGGAACCTTAGATTCTCTACTCGCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGTGGTGTCTCTTCCAGTGAAAGACTCTGCTTCTTCGTTATGGAATCGATTACAAGAGCAGATCTCTAAGCATTCCTTTGATACTCCAGTTTATCGGgtactctgatttttgctcgatttggtcttattgcaaaatttagcacagatcttatactatctcttgctactttcgtgtctacgattctaattacgatctaattccgtgagttttggtttcaatttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT