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CAATCAAGCCGTATTAACAACACTCTTCCTTTGCCTTCTGTTCTCAAAGGAGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAGgttagatactcgcgatttgagtttttttatcagtctgatctagatcttgttagtttggtgagaaaaattgaggaactagatgattttattaagctaaatt...
species | Arabidopsis thaliana |
transcript | AT1G12000.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAGEST: gi|124967015|gb|EL041079.1|EL041079
genomic: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAG
EST: AGTTCCGCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAGEST: gi|86069449|gb|DR365206.1|DR365206
genomic: AGTTCCGCCGCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAG
EST: AGTTCCGCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAGEST: gi|124727841|gb|EH819243.1|EH819243
genomic: AGTTCCGCCGCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAG
EST: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCAEST: gi|125257157|gb|EL271242.1|EL271242
genomic: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCA
EST: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGEST: gi|86069453|gb|DR365210.1|DR365210
genomic: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTG
EST: GCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAEST: gi|116438055|gb|EG480647.1|EG480647
genomic: GCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCC-GCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCA
EST: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAGEST: gi|125301347|gb|EL315432.1|EL315432
genomic: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAG
EST: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGTTTCCGGGTCTATATEST: gi|86069448|gb|DR365205.1|DR365205
genomic: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTGTTTCCGGGTCTATAT
EST: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAGEST: gi|86069455|gb|DR365212.1|DR365212
genomic: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAG
EST: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAG ATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAG
genomic: AGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAGgttagatact ... gtggttgtagATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCAGTAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATCAAGCCGTATTAACAACACTCTTCCTTTGCCTTCTGTTCTCAAAGGAGCTTTCAAAATCGTCGAAGGTCCCGCTAGTTCCGCCGCCGGGAATCCAGgttagatactcgcgatttgagtttttttatcagtctgatctagatcttgttagtttggtgagaaaaattgaggaactagatgattttattaagctaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
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