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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTCACGATGCCGTCTTCCTCCTCCGCCGCCGTCCTCGTGTTCCTTCTTCTCGTTTCCCTTCTCACTCCTACGTTCGCATCCGATTCAGATCACAAGgtaagactcggatctccagtcgttttttcttttcttttaatgcagctcgaaatcgagcactgtgtccgtagatccgtgatttgcatggtgtttgcgattg...

Basic information

species Arabidopsis thaliana
transcript AT1G10950.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125011347|gb|EL083616.1|EL083616
EST:     TCTCGTTTCCCTTCTCACTCCTACGTTCGCATCCGATTCAGATCACAAG                         TATCAAGCCGAGGA
genomic: TCTCGTTTCCCTTCTCACTCCTACGTTCGCATCCGATTCAGATCACAAGgtaagactcg ... cctttttcagTATCAAGCCGAGGA
EST: gi|125226410|gb|EL240495.1|EL240495
EST:     TTCTCGTTTCCCTTCTCACTCCTACGTTCGCATCCGATTCAGATCACAAG                         TATCAAGCCGAGGAGCAGGTCACCCTATGGGTAAACAAAGTT
genomic: TTCTCGTTTCCCTTCTCACTCCTACGTTCGCATCCGATTCAGATCACAAGgtaagactcg ... cctttttcagTATCAAGCCGAGGAGCAGGTCACCCTATGGGTAAACAAAGTT
EST: gi|125286179|gb|EL300264.1|EL300264
EST:     TTCTCGTTTCCCTTCTCACTCCTACGTTCGCATCCGATTCAGATCACAAG                         TATCAAGCCGAGGAGCAAGGTCACCCTATGAGTAAACAAAGTTGGCCCAT
genomic: TTCTCGTTTCCCTTCTCACTCCTACGTTCGCATCCGATTCAGATCACAAGgtaagactcg ... cctttttcagTATCAAGCCGAGGAGCA-GGTCACCCTATGGGTAAACAAAGTTGGCCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTTCACGATGCCGTCTTCCTCCTCCGCCGCCGTCCTCGTGTTCCTTCTTCTCGTTTCCCTTCTCACTCCTACGTTCGCATCCGATTCAGATCACAAGgtaagactcggatctccagtcgttttttcttttcttttaatgcagctcgaaatcgagcactgtgtccgtagatccgtgatttgcatggtgtttgcgattg

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