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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgtacgatgttctttcatgttttcacgtaacaatgttcatattcttcaatgcaatgttctgaatttttcaactttcctag

Basic information

species Arabidopsis thaliana
transcript AT1G09720.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os01g74510.1 (Oryza sativa), 5'ss of exon 1
------ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgta------cgatgttctttcatgttttcacgtaaca-atgttcatattcttcaatgca---atgttctga--------atttttcaactttcctag---
      ||| ||||| | || ||||||||||||||||||||||||||||| |||||||| ||||| || || ||||||||||| ||   | |||||||||||       | || |    || || | |    || || || ||    ||||   |   |   |||| || |        |||| |    ||    |    
GGCAGGATGCTGCAGCGGGCGGCGAGCAATGCGTATTCATGGTGGTGGGCGAGCCACATCCGCACCAAGCAGTCCAAATGGCTTGATAGCCATCTCCAAGgtgaccgtccaatatataatcttgatcttttttatcatatatttgatttctgtgagttatgtatgtacttatatgggagatttgttggtttgttcaatcc

upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os07g49480.1 (Oryza sativa), 5'ss of exon 1
------ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgtacgatgttctttcatgttttcacgtaacaatgttcatattcttca---atgcaatgttctgaattttt----caactttcctag------------------------------
      ||| ||||| | || || |||||||| || || ||||||||||| |||||||| ||||| |  || ||||||||||||||   |||||||||||||  | |     |||   |   |   |   | | ||  || |  | |   |||  ||||  |     |||      |||   ||||                              
CGGCGGATGCTGCAGCGGGCGGCAAGCAATGCCTACTCGTGGTGGTGGGCGAGCCACATCCGCACCACGCAGTCCAAATGGCTCGACGCCAATCTCCAAGgtttgtttccgcttcg-atccccctttcttagtcttactacttgttagggatgtgatgtgatccccctttgtagtcactacactagatgagagtactattattttggcgcacgcag

upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os01g61910.1 (Oryza sativa), 5'ss of exon 1
------ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgta----cgatgttctttcatgtttt-----cacgtaacaatgttcatattcttcaatgcaatgttctg--aatttttcaactt-tcctag---------
      ||| ||| | | || |||||||| || || || ||||||||||| |||||||| ||||| |  || ||||||||||||||  ||||  |||||||||    |  || |||   | ||        | |   |  |       |||| |   | || | ||||       || |||  | |  | |         
CCCGCGATGCTGCGGCGCGCGGCGAGCAACGCCTACTCGTGGTGGTGGGCGAGCCACATCCGCACCACCCAGTCCAAATGGCTCGACAACAACGTCCAAGgtatcgccattgctctccgaagtccgaacaacgcacgagcacagcagaattcgtagctacatttttctattgccgttccaatctattgtggatacgacgg

upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G062587_T01 (Zea mays), 5'ss of exon 1
------ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgtacgatgttctttcatgttt-----------tcacgtaacaatgttcatattct--tcaat--gcaatgttctgaatttttcaactttcctag-------
      ||| ||||| | |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| || |||||||||||  || | ||||||||||   ||||   || |||||           |  | | |  || ||||| |     | |||  | ||||        |   |  | |||||         
GAAAGGATGCTGCAGCGGGCAGCGAGCAATGCATATTCATGGTGGTGGGCAAGCCACATCCGCACCAAACAGTCAAAATGGCTCGACAACCACCTCCAAGgtatt-tgtttcatcttgtttgatcaaccttgttgcatgatgattttcatttcacagtaaattagtaatgcatctgtctgcccttcattccttacctgtcc

upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G438704_T01 (Zea mays), 5'ss of exon 1
------ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgtacgatgttctttcatgttttcacgtaacaatgttcatattc-ttcaatgcaatgttctgaatttttcaactttcctag
      ||| ||||| | |||||||||||||| ||||||||||||||||| |||||||| ||||  ||||| || |||||||||||  || | ||||||||||  |||       ||| || || | |  | | || || | |  |   ||    || ||  | ||  ||          
GAAGAGATGCTGCAGCGGGCAGCGAGCAATGCATATTCATGGTGGTGGGCAAGCCACATCCGCAGCAAACAGTCAAAATGGCTCGACAACCACCTCCAAGgta--atga------atgatt-catgcatgatttttaatgtgcgctgtgtgattcgtccttgaattcgcag---------

upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM5G856812_T01 (Zea mays), 5'ss of exon 1
ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgtacgatgtt-----ctttcatgttt---------tcacgtaacaatgttcatattcttcaatgcaatgttctg-aatttttcaactttcctag------
||| | | | | || || |||||||| ||||| ||||||||||| |||||||| ||||  | ||||||||||||||||||  ||||||| |||||||  ||  |     |  | ||| ||         || |  |  |||| |    || |   |     || | |  ||  ||| ||| ||  |        
ATGCTACGGCGCGCGGCAAGCAATGCTTATTCGTGGTGGTGGGCTAGCCACATCCGCAGCACACAATCCAAATGGCTCGACAACAATCTTCAAGgtagtataatgcccgccataatgcttaagaatagatcccccacaaatgatagagttttgagaaatcgtgatttacaaccttttaacattaatgtacatca

upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G049510_T01 (Zea mays), 5'ss of exon 1
------ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgtacgatgtt--ctttcatgttttcacgtaacaa--tgttcatattcttcaatgcaatg---ttctgaatttttcaactttcctag--------------
      ||| ||| | | |  |||||||| || || |||||||||||||| |||||||| ||||  |  || ||||||||||||||  ||||||| |||||||  || ||  ||  || | | |     || ||    |  | ||    | | |  |||            || |||| ||   ||              
ACCGCGATGCTGCGGCGCGTGGCGAGCAACGCCTACTCATGGTGGTGGGCGAGCCACATCCGCAACACGCAGTCCAAATGGCTCGACAACAATCTTCAAGgtaatattttgcctaccacgatgtttaagaataaatcatcaacataacacgaagacatgagaaatcatgacttccaaccttttaaggctatatattaatt

upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA06G10150.1 (Glycine max), 5'ss of exon 1
ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgtacgatgttctttcatgttttcacgtaac--aatgttcatattcttcaatgcaatgttctgaatttttcaactttcctag-----------
||||||   |||||||| | |||||| ||||||||||||||||| ||||| ||  | ||||| |||||||||||||| ||||| | ||||||||| |     |   |   | ||   |  || |   ||  |  | |   | | |      || |  ||  || || |     ||           
ATGTTGGGAAGAGCAGCAACCAATGCATATTCATGGTGGTGGGCAAGCCATATCAGGACAAAGCAATCCAAATGGCTAGAACAAAgtctccaaggcatataatatctctctcttaatatatagcttgatacttttctctcttagttttccattatctatcatt-aattccatcagaacgctttatc

upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA04G10160.1 (Glycine max), 5'ss of exon 1
ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgtacgatgttctttcatgttttcacgtaac--aatgttcatattcttcaatgcaatgttctgaatttttcaactttcctag---------------------
||||||   || ||||| | |||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||| ||||| | ||||| |||||     |||| | | || |  |  || |   ||  |  | |   | | |    | || |  ||  || || |     ||                     
ATGTTGGGAAGGGCAGCAACCAATGCATATTCATGGTGGTGGGCAAGCCACATCAGGACAAAGCAATCCAAATGGCTAGAACAAAGTCTCCGAGgtatatatttctctta-gtatatatatagcttgatacttttctctcttagttttctattatctatcatt-aattccatcagaacgctttattattttgccat

upper sequence: AT1G09720.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv18s0001g07610.t01 (Vitis vinifera), 5'ss of exon 1
ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACAAAACAATCCAAATGGCTCGAACACAATCTCCAAGgta-cgatgttctttc------atgttttca---cgtaacaatg----------ttcatattcttcaat-gcaatgttctgaatttttcaactttcctag-
|||||||| |||||||| | |||||| ||||| ||||||||||||||||||||  | || || || || |||||||| ||||| || || || ||||  | | ||| |||      |||   | |   | | | ||||          ||||| | || ||||  | ||||| ||  | ||| |  |||  ||  
ATGTTGCATAGAGCAGCAACCAATGCATATTCGTGGTGGTGGGCCAGCCACATCAGGACTAAGCAGTCTAAATGGCTTGAACAAAACCTTCATGgtaatgctattccttctccaccatgccataataccatgataatgctgattttggttcatctcctacaatcaccatgttatgt-tcttttacatttgttatt