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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagcttttgtgtcattgaattaggatttgagcttcttagtgtgctatttggattgttgatctattgctttgatgta...

Basic information

species Arabidopsis thaliana
transcript AT1G09690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os10g32820.1 (Oryza sativa), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaac--tctcctatctcttcagcttttgtgtcattgaattaggatttgagcttcttagtgtgctatttggattg-ttgatctattgctttgatgta
 ||  | |||||||| ||||| ||||||||||||||||| || || || ||  ||||||||||||| || |||||| |||| || ||  ||||||| ||||| | |    |  || || | | |  | ||    | | |      ||   ||       | |   ||||    ||   |   ||| | |  || |||      
CGCCGTGCACAAGGGGATGCCGCACAAGTTCTACCACGGCCGCACCGGCCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGgtataacccccgatccccaaacaccccggcggcggcgccgcctctttgtcat--agatctgtggttgtgtcgcttaagtgacttggtgtcatgtttttgccc-

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os03g04750.1 (Oryza sativa), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaact---ctcctatctcttcagcttttgtgtcattgaattaggatttgagcttcttagtgtgctatttggattgttgatctattgctttgatgta
 ||  | |||||||| ||||| ||||||||||||||||| || || || ||  ||||||||||||| || |||||| |||| || ||  ||||||| ||||| | ||   ||   ||||   |    | || |   |  |  |   |     |||   ||||| |    ||  |     | || ||||| |    |||     
CGCCGTGCACAAGGGCATGCCGCACAAGTTCTACCACGGCCGCACCGGCCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGgtataatccgctccgctccggccatagcggcatcctttcctcttcctccctctttt--cttctcaacaggcggtagatttggtagatctgtgctgttggctc-

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G149257_T01 (Zea mays), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagcttttgtgtcattgaattaggatttga-gcttcttagtgtgctatttgg-attgttgatctattgctttgatgta-
 ||  | |||||||| ||||| ||||||||||||||||| || || |||||  ||||||||||||| || |||||| |||| |||||  ||||||| ||||| | | |  | | ||    |   | |  ||   ||||||   |  | ||  |  ||   || |   | | | ||    || || |  || ||  |   |   
CGCCGTGCACAAGGGCATGCCGCACAAGTTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTTGAGATCAACAAGCAGgtataacgcccgcaccagcataccctgtgtt---gtcattcgttccgtatgcgccgccggtttgctagatgtgtgctgctgctggttgatggcaatacagcga

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G026216_T01 (Zea mays), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaac---tctcctatctct--tcagcttttgtgtcattgaat-tagg-atttgagcttcttagtgtgctatttggattgttgatctattgctttgatgta
 ||  |||||||||| ||||| ||||||||||||||||| || || |||||  ||||||||||||| || |||||| |||| || ||  | ||||| ||||| |     ||   || | | || ||     |||  |  ||   ||     ||| | ||||  |  || |||  |     ||    |   | || |||   || |  
CGCCGTCCACAAGGGGATGCCGCACAAGTTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATAAACAAGCAGgtataccacacggatcccttttcgctagctcgctgataggttgctgggcgcaggcagttgaaatcgtttgtgcac-----ggcgcttacgtttagtgcgcggacg--

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G089421_T01 (Zea mays), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagcttttgtgtcattgaattaggatttgagcttcttagtgtgctatttggattgttgat-ctattgctttgatgta------
 ||  | |||||||| ||||| ||||||||||||||||| || || ||  |  ||||||||||||| || |||||| |||| || ||  ||||||| ||||| | |      ||||     |  |  |  |  |||| ||   |  | ||  |   |  ||  |||   || |    || |||| ||| | |   |||| |      
CGCCGTGCACAAGGGCATGCCGCACAAGTTCTACCACGGCCGCACCGGGAGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGgtataa------ctcccgcaccagctaccatgctgtcgttcgttccgtatcagcattcgttt-tgttagatctatgctgctgatgctaatacacggatgcataggta

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA03G36560.1 (Glycine max), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagcttttgtgtcattgaattaggatttgagct-tcttagtgtgctatttggattgttgatctattgctttgatgta
 ||  |||||||||| ||||| |||||||||||||| || || || |||||  ||||||| ||||| ||||| || || || || ||||||||||| |||||||      |||| |  |  |   | |  |    | | |    |     | || || | ||  | ||   |||  || ||    |||| ||||  |  | 
CGCCGTCCACAAGGGAATGCCACACAAGTTCTACCATGGCCGCACCGGTCGCGTCTGGAATGTCACCAAACGTGCTGTTGGGGTCGAAGTCAACAAGCAGgtctcgcactctcttccttaaccctaacactctatttacttttctgcttctcgatctgttttgttatgtcttttttatcgtgatactatcgcttccaatt-

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA19G39240.1 (Glycine max), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagcttttgtgtcattgaattaggatttgagcttcttagtgtgctatttggattgttgatctattgctttgatgta
|||  | |||||||| ||||| ||||| |||||||| || || || || ||  ||||||| ||||| ||||| || || || || ||||||||||| ||||||| |    ||  | || | ||    |     |    |    ||  | |||  | |   | ||||  | | |   || |||   ||||    ||  | |
TGCCGTTCACAAGGGAATGCCCCACAAATTCTACCATGGCCGCACCGGACGCGTCTGGAATGTCACCAAACGTGCTGTTGGCGTCGAAGTCAACAAGCAGgtctcacactcttccttaaccctagcaccacccttctttccttttctgcttttcgatctgttgtgttttctgtttcttattgtgatattctcgtgtcgaa

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S91_107V6.1 (Physcomitrella patens), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagctttt--gtgtcattgaattaggatttgagcttcttagtgtgc--tatttggattgttgatctattgctttgatgta
 ||  | |||||||||||||| ||||||||||||||||| || |||||   | ||||||||||||| || ||||||||||| ||||   | ||||| |||||  | |   ||| |    |  ||    ||||  |||  ||  |  | |  |  |    |    | || |  | |||    |        | |  | |||    
AGCCGTTCACAAGGGTATGCCCCACAAGTTCTACCACGGCCGCACTGGAATTGTCTGGAACGTCACCAAGCGCGCCGTCGGCGTTGTGATGAACAAGCAGgtacggttctctcgctatccgttttttttttttggtggaatccagcttgtttcagtcggttccggcgttccttgtttcagcttacaccagaatattgtga----

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S1_780V6.1 (Physcomitrella patens), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttc------agcttttgtgtcattgaattagga-tttgagcttcttagtgtgctatttggattgttgatctattgctttgatgta
 ||  |||||||||||||||||||||||||||||||||| || || ||     ||||||||||||| || || ||||||||||| |   | ||||| ||||| ||||  ||  ||      | ||      |||    |   | | |   | |||  |    |||| |  |  | | |  || || |   ||| | |||        
AGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGGCGCACCGGCATCGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTCGTGATGAACAAGCAGgtatgattgaccttctccctccctcccccgaagccgaagccgcctggtcgtgggagctcccccttcctgcttcgttctagggtttttccttctttggctg-------

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S107_181V6.1 (Physcomitrella patens), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagcttttgtgtcattgaattaggatttgagcttcttagtgtgctatttggattgttgatctattgctttgatgta--
|||  |||||||||||||||||||||||||||||||||| || || ||     ||||||||||||| || |||||||| ||||| |   | ||||| ||||| || |      |  || |||||| ||| | || |  ||         | ||     |||| ||   |   |   | | ||     | ||    ||     
TGCTGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGACGCACCGGCATCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggt--ctctttgtacctcttcggctgtcgtctacttttggagatgtctgtctggcttaatgactttcgtctgtgggtgcgtcttcgccactattctcg

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S298_23V6.1 (Physcomitrella patens), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagcttttgtgtcattgaattaggatttgagcttcttagtgtgctatttggattgt-tgatctattgctttgatgta-
 ||  |||||||||| ||||| ||||||||||||||||| || || |||    ||||||| ||||| || ||||| || ||||| |   | ||||| ||||| |  ||   | |  |  |  | || |     |     ||  ||  | | ||  | |  |    |   ||  |     | |    |  || ||   |  | 
AGCCGTCCACAAGGGAATGCCCCACAAGTTCTACCACGGGCGCACCGGTATCGTCTGGAATGTCACCAAGCGCGCAGTTGGTGTCGTGATGAACAAGCAGgtgtagtg--ttttttttacgatccaacggcaattcttgtggtttttgttgtgccccttgtgtccttacatcagacgcatgtagcattctgtttctgtccat

upper sequence: AT1G09690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ29711 (Selaginella moellendorffii), 5'ss of exon 1
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagcttttgtgtcattgaattaggatttgagcttcttagtgtgct-atttggattgttgatctattgctttgatgta
 |||||||||||||| ||||| ||||| ||||||||||| || || ||   | | ||||| ||||| || ||||| ||||| || ||  | ||||| ||||| ||     | |  | |||| |||  ||||    |  |  |||| |   | |   |||  |   |  | || |||||| |||   | ||    |      
CGCGATCCACAAGGGCATGCCGCACAAATTCTACCACGGCCGCACCGGGGTTGTGTGGAATGTCACCAAGCGCGCGGTCGGAGTCGAGATGAACAAGCAGgtatgcc--tcgcatcaatcttttcgtctttc---tattccaattcgatgtgggttttcgcaagattttgatgtggattcttggcttcttctgctag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164236551|gb|ES002534.1|ES002534
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGA
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAA-CAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGA
EST: gi|47830240|gb|CK119924.1|CK119924
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|116421731|gb|EG464323.1|EG464323
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164026513|gb|ES185503.1|ES185503
EST:     GTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164125075|gb|EL987921.1|EL987921
EST:     TGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: TGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|47831861|gb|CK121545.1|CK121545
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164087239|gb|ES021270.1|ES021270
EST:     GTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCA
genomic: GTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCA
EST: gi|47827891|gb|CK117575.1|CK117575
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164063160|gb|ES151925.1|ES151925
EST:     CGTCACTAAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: CGTCACT-AAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|125210336|gb|EL225290.1|EL225290
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGAT
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGAT
EST: gi|124807986|gb|EH894356.1|EH894356
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAG
EST: gi|47828182|gb|CK117866.1|CK117866
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164078624|gb|ES116994.1|ES116994
EST:     CTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: CTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|116421732|gb|EG464324.1|EG464324
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|47828586|gb|CK118270.1|CK118270
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|125197670|gb|EL212624.1|EL212624
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAGCAAACAG                         ATTGGCAACAGG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGG
EST: gi|124855462|gb|EH939899.1|EH939899
EST:     GTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|116437447|gb|EG480039.1|EG480039
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGG
EST: gi|164208719|gb|ES201560.1|ES201560
EST:     GTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164121653|gb|ES036193.1|ES036193
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAG
EST: gi|124881999|gb|EH960901.1|EH960901
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAG
EST: gi|124817876|gb|EH902742.1|EH902742
EST:     GTATCTGGAACGACACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGAATTCATGTGCGTGTGGAGCAT
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGA-TTCATGTGCGTGTGGAGCAT
EST: gi|116411866|gb|EG454458.1|EG454458
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164218987|gb|ES204423.1|ES204423
EST:     CTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCAATAAGGAAGAGGATTCATGTGCGTGTGGAGCA
genomic: CTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCA-TAAGGAAGAGGATTCATGTGCGTGTGGAGCA
EST: gi|152037742|gb|BP796297.2|BP796297
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|47831994|gb|CK121678.1|CK121678
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|163998496|gb|ES044866.1|ES044866
EST:     AAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: AAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164121355|gb|ES093547.1|ES093547
EST:     GGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|47831273|gb|CK120957.1|CK120957
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164176415|gb|ES051831.1|ES051831
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCA
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCA
EST: gi|164076029|gb|ES001396.1|ES001396
EST:     CTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCA
genomic: CTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCA
EST: gi|164025008|gb|EL991745.1|EL991745
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGA
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGA
EST: gi|164153146|gb|ES191339.1|ES191339
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGG
EST: gi|47829318|gb|CK119002.1|CK119002
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|47831730|gb|CK121414.1|CK121414
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|116411876|gb|EG454468.1|EG454468
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|47831205|gb|CK120889.1|CK120889
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164005263|gb|EL990119.1|EL990119
EST:     ATCTGGAACGTCACTAAACACGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCA
genomic: ATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCA
EST: gi|124908766|gb|EH982846.1|EH982846
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTG
EST: gi|116464972|gb|EG507564.1|EG507564
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|163996325|gb|ES019309.1|ES019309
EST:     CTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: CTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|47831700|gb|CK121384.1|CK121384
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164084050|gb|ES167259.1|ES167259
EST:     GTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|47831268|gb|CK120952.1|CK120952
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|125070537|gb|EL135910.1|EL135910
EST:     TATCTGGAACGTCACTAAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAAGAGGATTCATGTGCGTGTGGAG
genomic: TATCTGGAACGTCACT-AAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAA-GAGGATTCATGTGCGTGTGGAG
EST: gi|47828136|gb|CK117820.1|CK117820
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|124706095|gb|EH797497.1|EH797497
EST:     TATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAAACAGGATCATAAGGAAGAGGATTCATGT
genomic: TATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAA-CAGGATCATAAGGAAGAGGATTCATGT
EST: gi|47828180|gb|CK117864.1|CK117864
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTG
EST: gi|164089782|gb|ES113692.1|ES113692
EST:     GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAG                         ATTGGCAACAGGATCATAAG
genomic: GTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaa ... ggtgtttcagATTGGCAACAGGATCATAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGgtctgatgaactctcctatctcttcagcttttgtgtcattgaattaggatttgagcttcttagtgtgctatttggattgttgatctattgctttgatgta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatctct