1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCGAAGATGATGATGTTGCAACAGCATCAGCCTTCTTTCTCTCTCCTTACTTCTTCTCTGTCTGACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAGgtctttttcatccttcgttctgacgactatcattatcaattttatcagatgggttctgcttttgtgtgtctgatgagccaaaatccgttcagcacatttc...
species | Arabidopsis thaliana |
transcript | AT1G09340.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGCGCTAAGCTCCATTTACAAGTCCAG TACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCGEST: gi|125053559|gb|EL124601.1|EL124601
genomic: TGGCGCTAAGCTCCATTTACAAGTCCAGgtctttttca ... aaaattgcagTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCG
EST: CTTCTTCTCTGTCTGACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAG TACAAGAGGAAGGTTCATCAGCCAAAEST: gi|116412032|gb|EG454624.1|EG454624
genomic: CTTCTTCTCTGTCTGACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAGgtctttttca ... aaaattgcagTACAAGAGGAAGGTTCATCAGCCAAA
EST: CTTCTTCTCTGTCTGACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAG TACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCGEST: gi|124977512|gb|EL050825.1|EL050825
genomic: CTTCTTCTCTGTCTGACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAGgtctttttca ... aaaattgcagTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCG
EST: TTTACAAGTCCAG TACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCGEST: gi|125042609|gb|EL114878.1|EL114878
genomic: TTTACAAGTCCAGgtctttttca ... aaaattgcagTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCG
EST: ACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAG TACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCGEST: gi|116412031|gb|EG454623.1|EG454623
genomic: ACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAGgtctttttca ... aaaattgcagTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCG
EST: CTTCTTCTCTGTCTGACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAG TACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCGEST: gi|125264802|gb|EL278887.1|EL278887
genomic: CTTCTTCTCTGTCTGACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAGgtctttttca ... aaaattgcagTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCG
EST: CAATGGCGCTAAGCTCCATTTACAAGTCCAG TACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCGEST: gi|125064364|gb|EL132013.1|EL132013
genomic: CAATGGCGCTAAGCTCCATTTACAAGTCCAGgtctttttca ... aaaattgcagTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCG
EST: TTCAATGGCGCTAAGCTCCATTTACAAGTCCAG TACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCG
genomic: TTCAATGGCGCTAAGCTCCATTTACAAGTCCAGgtctttttca ... aaaattgcagTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGAAGATGATGATGTTGCAACAGCATCAGCCTTCTTTCTCTCTCCTTACTTCTTCTCTGTCTGACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAGgtctttttcatccttcgttctgacgactatcattatcaattttatcagatgggttctgcttttgtgtgtctgatgagccaaaatccgttcagcacatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccaaaa