1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAGGATACGAGCTTCGAGGGAGACCAACTAGCTTCCATGACTACTGATGACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGgtcaccaccctctctctcttctctctatatttttaatctgctggctacttggaactagtatatttcttcattccaagctcactattaccttaatttgatt...
species | Arabidopsis thaliana |
transcript | AT1G09100.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACATCGGTAGAGCTTCTCNTCTCTTAGCCAACGAGATTCGCATCCTCAAG GAAGAATCGCAGAEST: gi|86061010|gb|DR356767.1|DR356767
genomic: ACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGgtcaccaccc ... tttgttgtagGAAGAATCGCAGA
EST: ACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAG GAAGAATCGCAGAGGACAAACCTTGATTTGGAATCAGTGAAGGAGAAAATAEST: gi|124892867|gb|EH971769.1|EH971769
genomic: ACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGgtcaccaccc ... tttgttgtagGAAGAATCGCAGAGGACAAACCTTGATTTGGAATCAGTGAAGGAGAAAATA
EST: ACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAG GAAGAATCGCAGAGGACAAACCTTGATTEST: gi|164109943|gb|EL974534.1|EL974534
genomic: ACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGgtcaccaccc ... tttgttgtagGAAGAATCGCAGAGGACAAACCTTGATT
EST: AGAGCTTCTCGTCTCTTAGCCAACGAGTATTCGCATCCTCAAG GAAGAATCGCAGAGGACAAACCTTGATTTGGAATCAGTGAAGGAGAAAATAEST: gi|86061012|gb|DR356769.1|DR356769
genomic: AGAGCTTCTCGTCTCTTAGCCAACGAG-ATTCGCATCCTCAAGgtcaccaccc ... tttgttgtagGAAGAATCGCAGAGGACAAACCTTGATTTGGAATCAGTGAAGGAGAAAATA
EST: ACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAG GAAGAATCGCAGAGGACAAACCTTGATTTGGAATCAGTGAAGGAGAAAATA
genomic: ACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGgtcaccaccc ... tttgttgtagGAAGAATCGCAGAGGACAAACCTTGATTTGGAATCAGTGAAGGAGAAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGATACGAGCTTCGAGGGAGACCAACTAGCTTCCATGACTACTGATGACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGgtcaccaccctctctctcttctctctatatttttaatctgctggctacttggaactagtatatttcttcattccaagctcactattaccttaatttgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcactat