Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACTCTCTCTCACACAGCAACGTTCTATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaatcatctcgaataggagtaatttattttgttagcatcttcttcaattgatgctaatggatggttgatgatgatgttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G08780.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86026581|gb|DR322334.1|DR322334
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         KGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026588|gb|DR322341.1|DR322341
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026595|gb|DR322348.1|DR322348
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026599|gb|DR322352.1|DR322352
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026594|gb|DR322347.1|DR322347
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026590|gb|DR322343.1|DR322343
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026577|gb|DR322330.1|DR322330
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026584|gb|DR322337.1|DR322337
EST:     TATTGAAADTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026597|gb|DR322350.1|DR322350
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGATGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026574|gb|DR322327.1|DR322327
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026585|gb|DR322338.1|DR322338
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026582|gb|DR322335.1|DR322335
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026583|gb|DR322336.1|DR322336
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGACGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026579|gb|DR322332.1|DR322332
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026576|gb|DR322329.1|DR322329
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026570|gb|DR322323.1|DR322323
EST:     TATTGAAATTTGGCCTAAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026600|gb|DR322353.1|DR322353
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026580|gb|DR322333.1|DR322333
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026596|gb|DR322349.1|DR322349
EST:     TATTGAAATTTGGCCTGAATCCCCAGAKTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAKAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026598|gb|DR322351.1|DR322351
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026587|gb|DR322340.1|DR322340
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026578|gb|DR322331.1|DR322331
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026589|gb|DR322342.1|DR322342
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026586|gb|DR322339.1|DR322339
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86077415|gb|DR373172.1|DR373172
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCWGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGACGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026575|gb|DR322328.1|DR322328
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026593|gb|DR322346.1|DR322346
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026571|gb|DR322324.1|DR322324
EST:     GAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: GAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026592|gb|DR322345.1|DR322345
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026572|gb|DR322325.1|DR322325
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026601|gb|DR322354.1|DR322354
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC