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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTCACTCAAAATGGAAAACTCTAAGGTTGAAGGAGAGCTCACTCCTCATGTCTATGGCTCTCTTCCTCTCATCGGTTCCTGGGATCCTTCCAAAGCTgtgagcatctgtttgatttttgttttatcttcttcgtctttccttccgattcattcatcgggaattttgattgcgtttctccgtcgtcttgttgtcaattaattcttctttaacag

Basic information

species Arabidopsis thaliana
transcript AT1G07110.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 1
CGTTTCACTCAAAATGGAAAACTCTAAGGTTGAAGGAGAGCTCACTCCTCATGTCTATGGCTCTCTTCCTCTCATCGGTTCCTGGGATCCTTCCAAAGCTgtgagcatctgtttgatttttgttttatcttcttcgtctttccttccgattcattcatcgggaattttgattgcgtttctccgtcgtcttgttgtcaattaattcttctttaacag
||| || ||||| ||||| ||    ||| |   ||| || ||   |||||| || ||||||||| |||||||| | ||||| |||||||||||||||||||| |       ||||||   |     | ||| |    ||||  |||   |    | |  |||  | |   || | ||||   ||  |||  |||   ||      ||   |   ||
CGTGTCTCTCAAGATGGAGAATCACAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCTGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTgtaat------tttgatcccta----accttttcttcctttggttcgtgtg---ttactgggtgtgtc--ttccttttcgttgtt-tctcattgcttatatgggttttggtgttag

upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 1
CGTTTCACTCAAAATGGAAAACTCTAAGGTTGAAGGAGAGCTCACTCCTCATGTCTATGGCTCTCTTCCTCTCATCGGTTCCTGGGATCCTTCCAAAGCTgtga-----gcatctgtttgatttttgttttatcttcttcgtctttccttccgattcattcatcgggaattttgattgcgtttctccgtcgtcttgttgtcaattaattcttctttaacag
||| || ||||| ||||| ||    ||| |   ||| || ||   |||||| || ||||||||  |||||||| | ||||| |||||||||||||||||||| |         ||      || ||  |||   |  |  ||   |   |  |  |  ||  |||    || | ||||| ||| |  ||  |  ||||                       
CGTGTCTCTCAAGATGGAGAATCACAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCCGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTgtaattttgatccctacccttttcttcctttggttcgtgtgttactgggtgtgtcttctttttcgttgtttctcattgcttttttgggttttggtgttag---------------------

upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 1
CGTTTCACTCAAAATGGAAAACTCTAAGGTTGAAGGAGAGCTCACTCCTCATGTCTATGGCTCTCTTCCTCTCATCGGTTCCTGGGATCCTTCCAAAGCTgtgagcatc-tgtttgatttttgttttatcttcttcgtctttccttccgattcattcatcgggaattttgattgcgtttctccgtcgtcttgttgtca--attaattcttctttaacag
||| || ||||| ||||| ||    ||| |   ||| || ||   |||||| || ||||||||| |||||||  | || || |||||||||||||||||||| |   |  |   |    |||  || || |   || | ||  |||| |  |   || ||     |||| ||||  | ||   |   | | | | |    ||||               
CGTCTCTCTCAAGATGGAGAATCGGAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCTGTTCCTCTTGTTGGCTCTTGGGATCCTTCCAAAGCTgtaattttgatccctacccttttcttcatttcgctcatttt--cttctgggtatgtcttct----ttttcattgtttctcattgctttttcggttttggcattag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116416223|gb|EG458815.1|EG458815
EST:     ATGTCTATGGCTCTCTTCCTCTCATCGGTTCCTGGGATCCTTCCAAAGCT                         CTTCCGATGCAACGTGAATCTGCGTTAATGTCGGAGCTAAGCTTCGTTGTT
genomic: ATGTCTATGGCTCTCTTCCTCTCATCGGTTCCTGGGATCCTTCCAAAGCTgtgagcatct ... tctttaacagCTTCCGATGCAACGTGAATCTGCGTTAATGTCGGAGCTAAGCTTCGTTGTT