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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTTTACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGATAAGgtttgtttgttcatcatcttgtgattttcaggagaactgaacattagtagaagaagcactagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacag

Basic information

species Arabidopsis thaliana
transcript AT1G06820.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 1
TGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTTTACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGATAAGgtttgtttgttcatcatct-tgtgattttcaggagaactgaacattagtagaagaagcactagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacag
 ||||||||| ||||||||||||| |||||||| |||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||  |||  ||  |  |   ||||||| |            |  |||  |      | |||  ||  |||      | | ||   ||| | ||| |    |||||        
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGAGATGGCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattggtgaatgtgattcttgctgtgttgtgaagttatcat-----gtact--ttaatttcacttattg-tatgataagattggatggtgttgaacat-----

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 1
TGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTTTACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGATAAGgtttgtttgttcatcatcttgtgattttcaggagaactgaacattagtagaagaagcactagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacag
 ||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||| || || |||||||||||||||||||| ||||||||  |||  ||  |||  ||  |   | || | ||         |  ||  |    |  || |||  ||  || || | | | || || |       || || | ||    |
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGTTTTTACCAGAGAGATGGGTATACTTTTGATGTGGGGTCCTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattcaattttgg---tgcatgtgattctttttctgttatcatttactttaatttcatt--tcattag-tgatgtgatga------gatatggatggtgttg

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 1
TGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTTTACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGATAAGgtttg-tttgttcatcatcttgtgattttcaggagaactgaacattagta-gaagaagcactagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacag
 ||||||||| ||||||||||||| |||||||| || ||| |||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||  | |||  | || ||  | |   ||   | |  |   |   |   |  | |  ||||         | ||     |  |||  | || ||   | || ||||         
GGAGAAGTATGTGATTCCTGGTGGGAGCTCTGGGTTCTACCAGAGAGATGGGTATACGTTTGATGTTGGGTCTTCTGTGATGTTTGGTTTCAGCGATAAGgtcggctttaataattattatattccttcttgaattatacactgtccttttgtatcagcaactaaaaactagga----gtttaagatgatcata-ttgaaattga---------

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ24009 (Selaginella moellendorffii), 5'ss of exon 1
TGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTTTACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGATAAGgtttgtttgttcatcatcttgtgattttcaggagaactgaacattagtagaagaagcactagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacag
 ||||||||  ||||||||||||| ||  |||| |||| | || ||||||| || ||||| |||||||| || || |||||||||||||||||||| ||||   ||  |  ||  |  ||||  ||   | | |  |  |   ||  | |     || | |    |                                              
AGAGAAGTACGTGATTCCTGGTGGAAGTGCTGGGTTTTTCAAGCGAGATGGCTACACTTTCGATGTTGGATCGTCCGTCATGTTTGGTTTCAGCGACAAGgcaagt--ggacaa-agtttgttcttgagaagcgttccaactcttttttgttcttgctccatccag----------------------------------------------

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ21638 (Selaginella moellendorffii), 5'ss of exon 1
TGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTTTACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGATAAGgtttgtttgttcatcatcttgtgattttcaggagaactgaacattagtagaagaagcactagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacag
 ||||||||  ||||||||||||| ||  |||| |||| | || ||||||| || ||||| |||||||| || || |||||||||||||||||||| ||||   ||  |  ||  |  ||||  ||   | |||  |  |   ||  | |     || | |    |                                              
AGAGAAGTACGTGATTCCTGGTGGAAGTGCTGGGTTTTTCAAGCGAGATGGCTACACTTTCGATGTTGGATCGTCCGTCATGTTTGGTTTCAGCGACAAGgcaagt--ggacaa-agtttgttcttgagaagagttccaactcttttttgttcttgctccatccag----------------------------------------------