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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTGAAATTGGGTGGCTCGGATTTGAAAGTGACGAAGCTTGGGATCGGAGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGgtcagttctcttaatttcgattctcaattttatacattttgtgaaacaaaagtattgaaatgaattaaaagttaatctctttttttttattctctgtgatggtag

Basic information

species Arabidopsis thaliana
transcript AT1G06690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv12s0028g01100.t01 (Vitis vinifera), 5'ss of exon 1
AAAGTGAAATTGGGTGGCTCGGATTTGAAAGTGACGAAGCTTGGGATCGGAGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGgtcagttctcttaatttcgattctcaattttatacattttgtgaaacaaaagtattgaaatgaattaaaagttaatctctttttttttattctctgtgatggtag---
|| ||||| ||||| || || |||||||||||||| |||||||| |||||||  ||||| ||||||||||     ||||||||| | ||| | ||||||||| ||||     ||   |    ||||    || |          |   ||| | ||||||||  |  | | ||  | | ||| ||   | |       ||  ||    
AAGGTGAAGTTGGGGGGTTCTGATTTGAAAGTGACAAAGCTTGGAATCGGAGCATGGTCATGGGGTGATACATCGTATTGGAATAACTTCGAATGGGATGgtgagttgcaaaaacccca---ctcag---taaaagggacagagattgaaaattttgaaatgtgtgcacaatt--tttttttcttggcagttgggagtattctaattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057249|gb|DR353006.1|DR353006
EST:     AGTCTGGTCATGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATG                         ACAGGAAATTGAAGGCTGCTAAAGGTGCTTTCGATACCAGTCTTGACAATG
genomic: AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGgtcagttctc ... gtgatggtagACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACG
EST: gi|116456052|gb|EG498644.1|EG498644
EST:     AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATG                         ACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACG
genomic: AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGgtcagttctc ... gtgatggtagACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACG
EST: gi|116456053|gb|EG498645.1|EG498645
EST:     AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATG                         ACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACG
genomic: AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGgtcagttctc ... gtgatggtagACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACG