1 5' 3' | 2 5' 3' | 3 5' 3' |
AAGCAAAATAAATCACCGGAAACTTCGTCGGTGGAAGATTGTCCGTCGCCTCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatctcatctttccatcgattgattcggtaatctaagttcaatcctagttcaaagtttgttgctttagtgttaaacaagaatgtggaatataccg...
species | Arabidopsis thaliana |
transcript | AT1G05870.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCG GTGATAATCCGGATGNTGTGAAAGCCAGGCTCNAATACTEST: gi|86074900|gb|DR370657.1|DR370657
genomic: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatct ... ttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACT
EST: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCG GTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCGEST: gi|47830288|gb|CK119972.1|CK119972
genomic: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatct ... ttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
EST: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCG GTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCGEST: gi|47831984|gb|CK121668.1|CK121668
genomic: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatct ... ttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
EST: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCG GTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
genomic: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatct ... ttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCAAAATAAATCACCGGAAACTTCGTCGGTGGAAGATTGTCCGTCGCCTCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatctcatctttccatcgattgattcggtaatctaagttcaatcctagttcaaagtttgttgctttagtgttaaacaagaatgtggaatataccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA