Sequence
atgc intronic sequence ATGC exonic sequenceTATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGgtaagaacgacttgtaatagctcgttcacatttcaatttttcctctaaaattcgagatcgccttggtaaaattagtgttgtggagtgattgatgaccata...
Basic information
species | Arabidopsis thaliana |
transcript | AT1G04630.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G04630.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G25670.1 (Glycine max), 5'ss of exon 1
TATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGgtaagaacga-cttgtaatagctcgttcacatt---tcaatttttcctctaaaattcgagatcgccttggtaaaattagtgttgtggagtgattgatgaccata
| | || | ||| || || || | ||||| ||||| || | || || || ||||||| |||||||||||||||||||| ||||| ||||| ||||| | ||| | || | || || ||| | ||||| || || | |||| | | ||| | || |
TCCCGAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACCACCTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtactttctttcttattatcatttatttctcttcgttcaggatcgtactagcaattcaagttcatacgttctgtagtagtagta-gtagtagtaaattcct---
upper sequence: AT1G04630.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G20010.2 (Glycine max), 5'ss of exon 1
TATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGgtaagaacgacttgtaatagctcgttcacatttcaatttttcctctaaaattcgagatcgccttggtaaaat-tagtgttgtggagtgattgatgaccata
| |||| | ||| || || || | ||||| ||||| | | || || || || ||||||| |||||||||||||||||||| ||||| ||||| ||||| || | | || | || | | ||| | | | | | ||| | | | | | | ||| || | || ||| ||||
TCCCCAACAAGGGCCCCAGCGCCGTTGCCATCTTCCTCACTGCTTTCGGCGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAGGGCAACAAGATCCGAAGgtagataccttcttctctttttcttcatcactcctctttcttcaggatcgtactagaaattcaagtttatacattctgtagtaggaggagtgaattccat-
upper sequence: AT1G04630.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv07s0005g04970.t01 (Vitis vinifera), 5'ss of exon 1
TATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGgtaagaacgacttgtaatagctcgttcacatttcaatttttcctctaaaattcgagatcgccttggtaaaattagtgttgtggagtgattgatgaccata-----
| | | | ||||| ||||| |||||||| || || |||| ||||| || ||||||| ||||||||||||||||| || ||||| ||||| |||||| | | | ||| || | | || || || ||| || | | || |||| | | || | |||| | |
TTCCGACCAAAGGTCCCAGTGCCATGGCCATCTTTCTAGCCGCCGTCGGTGCTTTCTCTTGGGGCATGTACCAGGTCGGCCAAGGCAACAAGATCCGGAGgtaaaattctactttcatatct---ttgctgtttgtttcgtcatctgt--ttggttgctgagaaagtgaaatggaagaaattgatagtttgaatcttagattttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86079106|gb|DR374863.1|DR374863EST: GCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAG GGCATTGAAGGAAGAGAAATATGCTGCTCGTAGAACAATACTTCCCATTCT
genomic: GCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGgtaagaacga ... tgatgtttagGGCATTGAAGGAAGAGAAATATGCTGCTCGTAGAACAATACTTCCCATTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGgtaagaacgacttgtaatagctcgttcacatttcaatttttcctctaaaattcgagatcgccttggtaaaattagtgttgtggagtgattgatgaccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttcctc