1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAATAGGAAGAAAGAAGAGTCAAGTCACTAAAATAACTTTCACAGTCTTTGATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtttccagcttttgatttttgtttctctcaattgaatttctcttgcttgctctgtttaaaaggattaggattaaatcgaatctctctctgttatgtttttttgtagattattttggattttaggactcaaagattacagatttcttatcaatcattctctgttattgttatag
species | Arabidopsis thaliana |
transcript | AT1G04400.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTG AACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTAEST: gi|86057514|gb|DR353271.1|DR353271
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTG AACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTAEST: gi|86057512|gb|DR353269.1|DR353269
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTG AACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTAEST: gi|86057513|gb|DR353270.1|DR353270
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTG AACTATTCTCTGGAGGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTEST: gi|86057522|gb|DR353279.1|DR353279
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGA-GGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTT
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTG AACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTAEST: gi|86057528|gb|DR353285.1|DR353285
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTG AACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTAEST: gi|86057518|gb|DR353275.1|DR353275
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTG AACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTNAEST: gi|86057515|gb|DR353272.1|DR353272
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTG AACTATTCTCTGGAGGAGGT--AGGTCTGAAATCATGGAACAACTTGGTTAEST: gi|86057523|gb|DR353280.1|DR353280
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTG AACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTAEST: gi|86057519|gb|DR353276.1|DR353276
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
EST: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGGTCTG AACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
genomic: GATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtt ... attgttatagAACTATTCTCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATAGGAAGAAAGAAGAGTCAAGTCACTAAAATAACTTTCACAGTCTTTGATTCGAAGATCTTTGTCGCCGAGAGATATCCACTCTGATTTGAGTTCTGgtaaaaagtttccagcttttgatttttgtttctctcaattgaatttctcttgcttgctctgtttaaaaggattaggattaaatcgaatctctctctgttatgtttttttgtagattattttggattttaggactcaaagattacagatttcttatcaatcattctctgttattgttatag
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