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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTTTCCTTTAGCGTCTGATTTCTGGAACAAGCTACTTGAGCTTCCGTTGAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCGgttagtgttgaaattgtaaaggatgtgttgtcgaattcactttgagctaatgaaattgaatgttgatgatgacctagtgaaagtaggaggatgatcttattttctttttttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G04200.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070557|gb|DR366314.1|DR366314
EST:     GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCG                         CACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
genomic: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCGgttagtgttg ... tttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
EST: gi|86072706|gb|DR368463.1|DR368463
EST:     GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCG                         CACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTNN
genomic: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCGgttagtgttg ... tttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
EST: gi|86070556|gb|DR366313.1|DR366313
EST:     GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCG                         CACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
genomic: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCGgttagtgttg ... tttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
EST: gi|86070555|gb|DR366312.1|DR366312
EST:     GAGTTCTCGCTGGCCTAGTGTTCGGGTTCAACAAGCCTGTGAACTTTTCG                         CACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
genomic: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCGgttagtgttg ... tttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT