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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCTTTCGTGATGACGGAATCTATCTGGTTAAACGATCAATCTTCTCCTCGGTCGATGATACCTTCAGCAAAACCAGTGGCTAATGTCCATCGCCAGAGgtcaggactagcttattgacttgagtttgaattatggattcttgtagtagaacctttttgatgcctttgaattatagaaactaggaactactttgttcat...

Basic information

species Arabidopsis thaliana
transcript AT1G04140.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164235510|gb|ES002519.1|ES002519
EST:     GCAAAACCNGTGGCTAATGTCCATCGCCAGAG                         GTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATT-CACCAAACAC
genomic: GCAAAACCAGTGGCTAATGTCCATCGCCAGAGgtcaggacta ... gattattcagGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACAC
EST: gi|116443186|gb|EG485778.1|EG485778
EST:     CGGTCGATGATACCTTCAGCAAAACCAGTGGCTAATGTCCATCGCCAGAG                         GTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACAC
genomic: CGGTCGATGATACCTTCAGCAAAACCAGTGGCTAATGTCCATCGCCAGAGgtcaggacta ... gattattcagGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACAC
EST: gi|86085412|gb|DR381171.1|DR381171
EST:     AACCAGTGGCTAATGTCCATCGCCAGAG                         GTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACAC
genomic: AACCAGTGGCTAATGTCCATCGCCAGAGgtcaggacta ... gattattcagGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACAC