Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGACACTGTGACACTCTAGCACCTTCAGTTCCGTACAACAATGGCTCTCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttcaccattagtaatgatttccatcttgttatgatttgttttcgataaaatgaagaatttacctcaatgcaatggtgattttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G03630.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86030065|gb|DR325818.1|DR325818
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTGTTACTGGTTCTTCATT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTT-TTACTGGTTCTTCATT
EST: gi|86030096|gb|DR325849.1|DR325849
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030089|gb|DR325842.1|DR325842
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|124753724|gb|EH843854.1|EH843854
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTC
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTC
EST: gi|86030088|gb|DR325841.1|DR325841
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030090|gb|DR325843.1|DR325843
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030098|gb|DR325851.1|DR325851
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|47830480|gb|CK120164.1|CK120164
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030100|gb|DR325853.1|DR325853
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030077|gb|DR325830.1|DR325830
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|125281741|gb|EL295826.1|EL295826
EST:     TTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|47831169|gb|CK120853.1|CK120853
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030075|gb|DR325828.1|DR325828
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030071|gb|DR325824.1|DR325824
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030091|gb|DR325844.1|DR325844
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030107|gb|DR325860.1|DR325860
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|124749114|gb|EH839244.1|EH839244
EST:     TCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030074|gb|DR325827.1|DR325827
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030070|gb|DR325823.1|DR325823
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030072|gb|DR325825.1|DR325825
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030082|gb|DR325835.1|DR325835
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030079|gb|DR325832.1|DR325832
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030097|gb|DR325850.1|DR325850
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030073|gb|DR325826.1|DR325826
EST:     TACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030104|gb|DR325857.1|DR325857
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030084|gb|DR325837.1|DR325837
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030076|gb|DR325829.1|DR325829
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030080|gb|DR325833.1|DR325833
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030102|gb|DR325855.1|DR325855
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|125305956|gb|EL320041.1|EL320041
EST:     CTCTTCTTCCTTCTACCATTTCAATTCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: CTCTTCTTCCTTCTACCATTTCAA-TCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|125283252|gb|EL297337.1|EL297337
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGG
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGG
EST: gi|86030106|gb|DR325859.1|DR325859
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030085|gb|DR325838.1|DR325838
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
EST: gi|86030101|gb|DR325854.1|DR325854
EST:     TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAG                         GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT
genomic: TCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttc ... gattttgcagGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAAGACACTGTGACACTCTAGCACCTTCAGTTCCGTACAACAATGGCTCTCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGgtatgttttcaccattagtaatgatttccatcttgttatgatttgttttcgataaaatgaagaatttacctcaatgcaatggtgattttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC